Factsheet for TraesCS6D01G120900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G264300.1
TraesCS1B01G275000.1
TraesCS1D01G264500.1
TraesCS3A01G406500.2
TraesCS3B01G440200.3
TraesCS3D01G401700.1
TraesCS5A01G286800.1
TraesCS5B01G286100.2
TraesCS5D01G294500.1
TraesCS7A01G260600.1
TraesCS7A01G481600.1
TraesCS7B01G158600.1
TraesCS7B01G384000.1
TraesCS7D01G261600.1
TraesCS7D01G468700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	TraesCS7A01G481600.1	AT1G30950.1	18287201
AT3G54340.1	TraesCS7B01G384000.1	AT1G30950.1	18287201
AT3G54340.1	TraesCS7D01G468700.1	AT1G30950.1	18287201
AT3G54340.1	TraesCS5A01G286800.1	AT3G02310.1	15604664
AT3G54340.1	TraesCS5B01G286100.2	AT3G02310.1	15604664
AT3G54340.1	TraesCS5D01G294500.1	AT3G02310.1	15604664
AT3G54340.1	TraesCS7A01G260600.1	AT3G02310.1	15604664
AT3G54340.1	TraesCS7B01G158600.1	AT3G02310.1	15604664
AT3G54340.1	TraesCS7D01G261600.1	AT3G02310.1	15604664
AT3G54340.1	TraesCS1A01G264300.1	AT5G20240.1	15604664
AT3G54340.1	TraesCS1B01G275000.1	AT5G20240.1	15604664
AT3G54340.1	TraesCS1D01G264500.1	AT5G20240.1	15604664
AT3G54340.1	TraesCS3A01G406500.2	AT5G20240.1	15604664
AT3G54340.1	TraesCS3B01G440200.3	AT5G20240.1	15604664
AT3G54340.1	TraesCS3D01G401700.1	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G159400.1	Wheat	nucleus	90.38	93.51
TraesCS6A01G131100.1	Wheat	nucleus	90.8	90.8
TraesCS7D01G380300.1	Wheat	nucleus	75.31	79.3
EER90370	Sorghum	nucleus	73.22	77.43
Os06t0712700-01	Rice	nucleus	71.13	75.89
Zm00001d036425_P002	Maize	nucleus	70.29	74.01
GSMUA_Achr9P20940_001	Banana	nucleus	25.94	60.78
KRH61083	Soybean	nucleus	32.64	56.12
HORVU7Hr1G091210.4	Barley	nucleus, plastid	55.23	55.46
KRH25650	Soybean	nucleus	28.45	51.52
KRH66520	Soybean	nucleus	28.45	51.52
KRH07712	Soybean	nucleus	28.03	50.76
VIT_18s0001g13460.t01	Wine grape	nucleus	46.03	48.67
CDY69833	Canola	nucleus	35.15	47.46
PGSC0003DMT400009510	Potato	nucleus	44.77	46.93
KRH51760	Soybean	nucleus	44.35	46.7
Solyc04g081000.2.1	Tomato	nucleus	43.51	45.61
Solyc02g084630.2.1	Tomato	nucleus	42.26	44.89
PGSC0003DMT400009112	Potato	nucleus	41.84	44.44
CDX76152	Canola	nucleus	40.17	42.86
AT3G54340.1	Thale cress	nucleus	41.42	42.67
CDX73487	Canola	nucleus	41.42	42.67
Bra014822.1-P	Field mustard	nucleus	39.75	42.41
CDY13200	Canola	nucleus	39.75	42.41
Bra007067.1-P	Field mustard	nucleus	41.0	42.24
KRH28746	Soybean	nucleus	38.91	39.74
KRH76708	Soybean	nucleus	38.91	38.27
VIT_04s0023g02820.t01	Wine grape	nucleus	46.03	35.95
TraesCS3D01G401700.1	Wheat	nucleus	29.71	33.97
TraesCS3D01G284200.1	Wheat	nucleus	26.36	32.14
TraesCS1D01G441200.1	Wheat	nucleus	24.27	30.53
TraesCS1D01G264500.1	Wheat	nucleus	26.78	29.36
TraesCS3D01G102700.1	Wheat	nucleus	25.52	26.64
TraesCS6D01G147400.1	Wheat	nucleus	27.62	26.19
TraesCS2D01G418800.2	Wheat	nucleus	27.62	24.35
TraesCS3D01G090300.1	Wheat	nucleus	19.67	21.46

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF251	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS6D01G120900	EnsemblPlants:TraesCS6D01G120900.1	TIGR:cd00265	:

Description

No Description!

Coordinates

chr6D:+:85911107..85913108

Molecular Weight (calculated)

27158.6 Da

IEP (calculated)

9.050

GRAVY (calculated)

-0.566

Length

239 amino acids

Sequence
(BLAST)

001: MGRLGKFEIK RIEDATSRQV SYSKRRSGIM KKARELAVLC DAQVAIVMLS STGKHHHFCS DGADIKGIFD RYQQATGTSL WTEQYENMQR TLSRLKSINR
101: NLRTEIRQRM GEDLDALEFK ELRGLEQNVG AALEVVRQRK YHVITRQTEI YKKKVKHSEE VYKKLQQELS MREDPAFGFM DNRAFGFMDN PVMGGWDGVA
201: AVEMGGGGSE ADMYAFHAVS SQLDLHGMAY GRSDCPLFG

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.