CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28746	Soybean	nucleus	91.36	94.87
GSMUA_Achr9P20940_001	Banana	nucleus	26.34	62.75
KRH61083	Soybean	nucleus	35.8	62.59
Solyc02g084630.2.1	Tomato	nucleus	56.79	61.33
PGSC0003DMT400009112	Potato	nucleus	56.38	60.89
KRH07712	Soybean	nucleus	29.63	54.55
KRH25650	Soybean	nucleus	29.22	53.79
KRH66520	Soybean	nucleus	29.22	53.79
GSMUA_Achr9P20950_001	Banana	nucleus	48.15	52.0
KRH51760	Soybean	nucleus	47.33	50.66
VIT_04s0023g02820.t01	Wine grape	nucleus	62.14	49.35
EER90370	Sorghum	nucleus	45.68	49.12
Zm00001d036425_P002	Maize	nucleus	45.27	48.46
Os06t0712700-01	Rice	nucleus	43.62	47.32
TraesCS7B01G286600.2	Wheat	nucleus	44.44	47.16
TraesCS7D01G380300.1	Wheat	nucleus	44.03	47.14
TraesCS7A01G383800.1	Wheat	nucleus	44.44	45.57
KRH53304	Soybean	nucleus	31.28	41.99
KRH64611	Soybean	nucleus	30.86	41.44
TraesCS6B01G159400.1	Wheat	nucleus	38.27	40.26
TraesCS6D01G120900.1	Wheat	nucleus	38.27	38.91
TraesCS6A01G131100.1	Wheat	nucleus	37.04	37.66
KRH16433	Soybean	nucleus	32.1	37.5
KRH18034	Soybean	nucleus	31.69	37.02
HORVU7Hr1G091210.4	Barley	nucleus, plastid	35.8	36.55
KRH40895	Soybean	nucleus	29.63	29.51
KRG89112	Soybean	nucleus	29.63	29.39

Protein Annotations

EntrezGene:100784496	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02000636	EMBL:BT094283	UniProt:C6T9V8
ncoils:Coil	EnsemblPlantsGene:GLYMA_01G169600	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	EnsemblPlants:KRH76708	ProteinID:KRH76708	ProteinID:KRH76708.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF251	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001B15DBF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:50706330..50708358

Molecular Weight (calculated)

28024.9 Da

IEP (calculated)

9.824

GRAVY (calculated)

-0.646

Length

243 amino acids

Sequence
(BLAST)

001: MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYISP GLTTKKIIDQ YQKTLGDIDL WHSHYEKMLE NLKKLKDINN
101: KLRRQIRHRI GEGLDMDDMS FQQLRTLEED MVSSIGKIRE RKFHVIKTRT DTCRKKVKSL KQMNGNLLLE LKEKCVIHPQ FLLHDEGDEE SAAAAAAAAV
201: ALANGASTLY AFCHQHHSHL NLFSHHSNGE EQPFKTDHDL RLA

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.