Factsheet for HORVU7Hr1G091210.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G063620.1
HORVU3Hr1G091000.8
HORVU5Hr1G076400.1
HORVU7Hr1G054220.3
HORVU7Hr1G108970.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	HORVU7Hr1G108970.1	AT1G30950.1	18287201
AT3G54340.1	HORVU5Hr1G076400.1	AT3G02310.1	15604664
AT3G54340.1	HORVU7Hr1G054220.3	AT3G02310.1	15604664
AT3G54340.1	HORVU1Hr1G063620.1	AT5G20240.1	15604664
AT3G54340.1	HORVU3Hr1G091000.8	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P20940_001	Banana	nucleus	29.41	68.63
TraesCS7B01G286600.2	Wheat	nucleus	63.87	66.38
TraesCS7D01G380300.1	Wheat	nucleus	63.03	66.08
Os06t0712700-01	Rice	nucleus	61.76	65.62
EER90370	Sorghum	nucleus	60.92	64.16
TraesCS7A01G383800.1	Wheat	nucleus	63.45	63.71
KRH61083	Soybean	nucleus	36.97	63.31
Zm00001d036425_P002	Maize	nucleus	60.08	63.0
TraesCS6B01G159400.1	Wheat	nucleus	54.62	56.28
KRH25650	Soybean	nucleus	30.67	55.3
KRH66520	Soybean	nucleus	30.67	55.3
TraesCS6D01G120900.1	Wheat	nucleus	55.46	55.23
KRH07712	Soybean	nucleus	30.25	54.55
TraesCS6A01G131100.1	Wheat	nucleus	52.94	52.72
CDY69833	Canola	nucleus	36.97	49.72
VIT_18s0001g13460.t01	Wine grape	nucleus	42.86	45.13
KRH51760	Soybean	nucleus	41.18	43.17
PGSC0003DMT400009510	Potato	nucleus	40.76	42.54
Solyc04g081000.2.1	Tomato	nucleus	39.92	41.67
Solyc02g084630.2.1	Tomato	nucleus	38.66	40.89
PGSC0003DMT400009112	Potato	nucleus	37.82	40.0
CDX76152	Canola	nucleus	37.4	39.73
Bra014822.1-P	Field mustard	nucleus	37.4	39.73
CDY13200	Canola	nucleus	36.97	39.29
AT3G54340.1	Thale cress	nucleus	37.4	38.36
Bra007067.1-P	Field mustard	nucleus	36.97	37.93
CDX73487	Canola	nucleus	36.97	37.93
VIT_04s0023g02820.t01	Wine grape	nucleus	48.32	37.58
KRH28746	Soybean	nucleus	36.13	36.75
KRH76708	Soybean	nucleus	36.55	35.8
HORVU1Hr1G063620.1	Barley	nucleus	25.63	27.35
HORVU3Hr1G091000.8	Barley	nucleus, plastid	28.99	25.27
HORVU2Hr1G098930.3	Barley	nucleus	28.57	24.64
HORVU6Hr1G032220.7	Barley	nucleus	25.63	23.46
HORVU3Hr1G068900.3	Barley	nucleus, plastid	24.79	20.14
HORVU7Hr1G108280.4	Barley	nucleus, plastid	21.85	19.48
HORVU7Hr1G108410.1	Barley	nucleus	15.13	16.51

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287XB19	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
EnsemblPlantsGene:HORVU7Hr1G091210	EnsemblPlants:HORVU7Hr1G091210.4	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF251	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000B46ED28	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:557244345..557245839

Molecular Weight (calculated)

26719.9 Da

IEP (calculated)

10.630

GRAVY (calculated)

-0.648

Length

238 amino acids

Sequence
(BLAST)

001: PSSPPRNAHA HSAPRTSIHP SFTKPAAGEG AAAASRSPSL VHFLLRASLR RARDLASKLA RSQAVAARAG ARAIAGTEEV DRPAEMGRGK IEIKRIENAT
101: NRQVTYSKRR SGIMKKAREL TVLCDAQVAI IMFSSTGKYH EFCSTGTDIK GIFDRYQQAI GTSLWIEQYE NMQRTLSHLK DINRNLRTEI RQRMGEDLDA
201: LEFEELRGLE QNVDAALKEV RQRKYHVITT QTETYKKK

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.