Factsheet for HORVU3Hr1G068900.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G284200.1	Wheat	nucleus	65.53	97.96
TraesCS3B01G318300.1	Wheat	cytosol	65.19	97.45
TraesCS3A01G284400.1	Wheat	nucleus	64.16	88.26
Os01t0726400-01	Rice	nucleus	58.36	87.24
KXG33296	Sorghum	nucleus	54.95	81.73
Zm00001d011748_P001	Maize	nucleus	52.9	78.68
Zm00001d043589_P002	Maize	plastid	60.41	64.36
GSMUA_Achr9P05780_001	Banana	nucleus	43.34	59.35
HORVU1Hr1G063620.1	Barley	nucleus	21.16	27.8
HORVU6Hr1G032220.7	Barley	nucleus	22.18	25.0
HORVU7Hr1G091210.4	Barley	nucleus, plastid	20.14	24.79
HORVU7Hr1G108280.4	Barley	nucleus, plastid	21.5	23.6
HORVU2Hr1G098930.3	Barley	nucleus	21.5	22.83
HORVU7Hr1G108410.1	Barley	nucleus	15.36	20.64
HORVU3Hr1G091000.8	Barley	nucleus, plastid	18.77	20.15

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287LI80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:HORVU3Hr1G068900	EnsemblPlants:HORVU3Hr1G068900.3
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF214	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000B4641E9	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:522144234..522146643

Molecular Weight (calculated)

33068.6 Da

IEP (calculated)

9.986

GRAVY (calculated)

-0.634

Length

293 amino acids

Sequence
(BLAST)

001: PKASYNYYST TNTPNKQRTV TSLSSTQQHS RGSSRGQPKP FLILARSRKR KAPCSAARLR VWEGARPEGE TGDDMGRGRS EIKRIDNPTQ RQSTFYKRRD
101: GLFKKARELA VLCDADLLLL LFSASGKLYQ YLAPTAPSVK EFVERYEAAT HTKVWSDIRQ ERRAELEKVA KMCDLLEKEL RFMTVDDGEQ YTVPSLAALE
201: HNLEAAMHKV RSEKDRKIGG EMTYLENIVS RSSAYSYLPV TRLMLVSCCM QIRGKQAERY GLCDKLAHAQ SLKVAEGGST SLNNGLDLKL GFN

Best Arabidopsis Sequence Match ( AT5G20240.2 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQV CIHFYIHSYT

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.