Factsheet for HORVU1Hr1G063620.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G113750.1
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU5Hr1G076400.1
HORVU6Hr1G023630.1
HORVU7Hr1G054220.3
HORVU7Hr1G078010.1
HORVU7Hr1G091210.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	HORVU0Hr1G018470.1	AT1G22920.1	21798944
AT5G20240.1	HORVU0Hr1G025410.1	AT1G22920.1	21798944
AT5G20240.1	HORVU1Hr1G008160.1	AT1G22920.1	21798944
AT5G20240.1	HORVU2Hr1G056160.5	AT1G22920.1	21798944
AT5G20240.1	HORVU2Hr1G067660.1	AT1G22920.1	21798944
AT5G20240.1	HORVU2Hr1G112000.1	AT1G22920.1	21798944
AT5G20240.1	HORVU3Hr1G021300.1	AT1G22920.1	21798944
AT5G20240.1	HORVU3Hr1G054660.1	AT1G22920.1	21798944
AT5G20240.1	HORVU3Hr1G113750.1	AT1G22920.1	21798944
AT5G20240.1	HORVU4Hr1G047410.2	AT1G22920.1	21798944
AT5G20240.1	HORVU4Hr1G048730.1	AT1G22920.1	21798944
AT5G20240.1	HORVU6Hr1G023630.1	AT1G22920.1	21798944
AT5G20240.1	HORVU7Hr1G078010.1	AT1G22920.1	21798944
AT5G20240.1	HORVU5Hr1G076400.1	AT3G02310.1	15604664
AT5G20240.1	HORVU7Hr1G054220.3	AT3G02310.1	15604664
AT5G20240.1	HORVU7Hr1G091210.4	AT3G54340.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G275000.1	Wheat	nucleus	91.48	98.08
TraesCS1A01G264300.1	Wheat	nucleus	91.48	98.08
Os05t0423400-01	Rice	nucleus	78.92	81.86
Zm00001d010232_P001	Maize	nucleus	74.89	78.77
EES18254	Sorghum	nucleus	73.54	77.36
TraesCS1D01G264500.1	Wheat	nucleus	75.34	77.06
Zm00001d010233_P004	Maize	nucleus	73.09	63.67
GSMUA_Achr6P18670_001	Banana	nucleus	58.74	62.09
GSMUA_Achr5P01230_001	Banana	nucleus	58.74	62.09
Bra002285.1-P	Field mustard	nucleus	38.12	58.22
HORVU3Hr1G091000.8	Barley	nucleus, plastid	70.85	57.88
KRH16433	Soybean	nucleus	53.36	57.21
VIT_18s0001g01760.t01	Wine grape	nucleus	54.26	57.08
KRH18034	Soybean	nucleus	52.91	56.73
KRH64611	Soybean	nucleus	44.84	55.25
KRH53304	Soybean	nucleus	44.39	54.7
CDY35823	Canola	nucleus	36.77	53.25
CDY60377	Canola	nucleus	48.43	53.2
CDX88846	Canola	nucleus	48.43	53.2
AT5G20240.1	Thale cress	nucleus	48.88	52.4
CDY45099	Canola	nucleus	47.53	52.22
CDX92479	Canola	nucleus	35.87	51.95
Solyc06g059970.2.1	Tomato	nucleus	49.78	51.87
Bra020093.1-P	Field mustard	nucleus	47.09	51.72
Bra006549.1-P	Field mustard	nucleus	47.98	51.44
PGSC0003DMT400019070	Potato	nucleus	45.74	48.57
Solyc08g067230.2.1	Tomato	nucleus	45.74	48.57
HORVU6Hr1G032220.7	Barley	nucleus	36.32	31.15
PGSC0003DMT400019069	Potato	cytosol	8.07	30.0
HORVU7Hr1G091210.4	Barley	nucleus, plastid	27.35	25.63
HORVU2Hr1G098930.3	Barley	nucleus	30.04	24.28
HORVU7Hr1G108410.1	Barley	nucleus	21.08	21.56
HORVU3Hr1G068900.3	Barley	nucleus, plastid	27.8	21.16
HORVU7Hr1G108280.4	Barley	nucleus, plastid	24.66	20.6

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287FYD5	ncoils:Coil	GO:GO:0000003	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010093	GO:GO:0045944	GO:GO:0046983
EnsemblPlantsGene:HORVU1Hr1G063620	EnsemblPlants:HORVU1Hr1G063620.1	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF211	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000B46874B	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:456418848..456420927

Molecular Weight (calculated)

26076.5 Da

IEP (calculated)

9.655

GRAVY (calculated)

-0.743

Length

223 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSSNRQVT FAKRRAGLVK KAREIGVLCD AEVGVVIFSS AGKLYDFWTP KTTLPRILEK YQTNSGKILW DEKHKSISAE IDRVKKENDN
101: MQIELRHMKG EDVNSLQPKE LIAIEEALTN GQTSLRDLQM DHWKMHRRNV WALKLSLRFE FPSEKMLEEE HKLLALRMHQ QDVELSSGMR EMELGYHQGR
201: DFTSQMPFTF RLQPSHPNLQ EDK

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.