Factsheet for Solyc06g059970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g104510.2.1
Solyc02g089200.2.1
Solyc04g081000.2.1
Solyc05g007420.1.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT5G20240.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G20240.1	Solyc05g007420.1.1	AT1G69690.1	21798944
AT5G20240.1	Solyc02g089200.2.1	AT3G02310.1	15604664
AT5G20240.1	Solyc04g081000.2.1	AT3G54340.1	15604664
AT5G20240.1	Solyc01g104510.2.1	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002285.1-P	Field mustard	nucleus	46.73	68.49
Solyc08g067230.2.1	Tomato	nucleus	62.15	63.33
CDY35823	Canola	nucleus	45.33	62.99
GSMUA_Achr5P01230_001	Banana	nucleus	61.68	62.56
CDX92479	Canola	nucleus	44.86	62.34
CDX88846	Canola	nucleus	58.88	62.07
CDY45099	Canola	nucleus	58.88	62.07
CDY60377	Canola	nucleus	58.88	62.07
Bra020093.1-P	Field mustard	nucleus	58.41	61.58
AT5G20240.1	Thale cress	nucleus	59.81	61.54
GSMUA_Achr6P18670_001	Banana	nucleus	59.35	60.19
Bra006549.1-P	Field mustard	nucleus	57.48	59.13
TraesCS3D01G401700.1	Wheat	nucleus	55.61	56.94
TraesCS3A01G406500.2	Wheat	nucleus	55.61	56.94
Os01t0883100-01	Rice	nucleus	55.14	56.46
EES01864	Sorghum	nucleus	55.14	56.46
EES18254	Sorghum	nucleus	55.61	56.13
Zm00001d010232_P001	Maize	nucleus	55.14	55.66
TraesCS3B01G440200.3	Wheat	nucleus	55.61	55.61
Os05t0423400-01	Rice	nucleus	54.21	53.95
TraesCS1A01G264300.1	Wheat	nucleus	51.87	53.37
TraesCS1B01G275000.1	Wheat	nucleus	51.87	53.37
Zm00001d042618_P001	Maize	nucleus	55.14	52.44
HORVU1Hr1G063620.1	Barley	nucleus	51.87	49.78
Zm00001d010233_P004	Maize	nucleus	54.21	45.31
TraesCS1D01G264500.1	Wheat	nucleus	44.86	44.04
HORVU3Hr1G091000.8	Barley	nucleus, plastid	56.07	43.96
Solyc02g084630.2.1	Tomato	nucleus	39.25	37.33
Solyc04g081000.2.1	Tomato	nucleus	37.85	35.53
Solyc11g005120.1.1	Tomato	nucleus	31.78	28.57

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010093	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:K4C6I1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF354	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc06g059970.2	EnsemblPlants:Solyc06g059970.2.1	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002441AEC	:	:	:

Description

No Description!

Coordinates

chr6:-:37896305..37899335

Molecular Weight (calculated)

24869.0 Da

IEP (calculated)

9.495

GRAVY (calculated)

-0.851

Length

214 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENTNNRQVT YSKRRNGIIK KAKEITVLCE AKVSLIIFAS SGKMHEYCSP STTISDMLDG YQKASGRRLW DAKHENLSNE IDRIKKENDS
101: MQVKLRHLKG EDINQLTHKE LIIMEEALQN GLSSISAKQS EILRMVRKND QILEEENKQL QYALHQKEMG AIGGSGNMRG IHEEVYHQRE RDYEYQMPFG
201: LRVQPMQPNL HERM

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.