Factsheet for HORVU3Hr1G091000.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G113750.1
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU5Hr1G076400.1
HORVU6Hr1G023630.1
HORVU7Hr1G054220.3
HORVU7Hr1G078010.1
HORVU7Hr1G091210.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	HORVU0Hr1G018470.1	AT1G22920.1	21798944
AT5G20240.1	HORVU0Hr1G025410.1	AT1G22920.1	21798944
AT5G20240.1	HORVU1Hr1G008160.1	AT1G22920.1	21798944
AT5G20240.1	HORVU2Hr1G056160.5	AT1G22920.1	21798944
AT5G20240.1	HORVU2Hr1G067660.1	AT1G22920.1	21798944
AT5G20240.1	HORVU2Hr1G112000.1	AT1G22920.1	21798944
AT5G20240.1	HORVU3Hr1G021300.1	AT1G22920.1	21798944
AT5G20240.1	HORVU3Hr1G054660.1	AT1G22920.1	21798944
AT5G20240.1	HORVU3Hr1G113750.1	AT1G22920.1	21798944
AT5G20240.1	HORVU4Hr1G047410.2	AT1G22920.1	21798944
AT5G20240.1	HORVU4Hr1G048730.1	AT1G22920.1	21798944
AT5G20240.1	HORVU6Hr1G023630.1	AT1G22920.1	21798944
AT5G20240.1	HORVU7Hr1G078010.1	AT1G22920.1	21798944
AT5G20240.1	HORVU5Hr1G076400.1	AT3G02310.1	15604664
AT5G20240.1	HORVU7Hr1G054220.3	AT3G02310.1	15604664
AT5G20240.1	HORVU7Hr1G091210.4	AT3G54340.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G406500.2	Wheat	nucleus	76.19	99.52
TraesCS3D01G401700.1	Wheat	nucleus	75.09	98.09
TraesCS3B01G440200.3	Wheat	nucleus	75.82	96.73
Os01t0883100-01	Rice	nucleus	67.03	87.56
EES01864	Sorghum	nucleus	66.3	86.6
Zm00001d042618_P001	Maize	nucleus	67.4	81.78
HORVU1Hr1G063620.1	Barley	nucleus	57.88	70.85
GSMUA_Achr5P01230_001	Banana	nucleus	49.08	63.51
GSMUA_Achr6P18670_001	Banana	nucleus	48.72	63.03
Bra002285.1-P	Field mustard	nucleus	32.6	60.96
KRH64611	Soybean	nucleus	39.56	59.67
KRH53304	Soybean	nucleus	39.19	59.12
VIT_18s0001g01760.t01	Wine grape	nucleus	45.79	58.96
KRH16433	Soybean	nucleus	44.69	58.65
KRH18034	Soybean	nucleus	44.69	58.65
Solyc06g059970.2.1	Tomato	nucleus	43.96	56.07
CDY35823	Canola	nucleus	31.5	55.84
CDX92479	Canola	nucleus	30.77	54.55
CDY60377	Canola	nucleus	40.29	54.19
CDX88846	Canola	nucleus	40.29	54.19
CDY45099	Canola	nucleus	39.93	53.69
Bra020093.1-P	Field mustard	nucleus	39.56	53.2
Solyc08g067230.2.1	Tomato	nucleus	40.66	52.86
Bra006549.1-P	Field mustard	nucleus	39.93	52.4
AT5G20240.1	Thale cress	nucleus	39.19	51.44
PGSC0003DMT400019070	Potato	nucleus	39.56	51.43
PGSC0003DMT400019069	Potato	cytosol	6.96	31.67
HORVU6Hr1G032220.7	Barley	nucleus	28.94	30.38
HORVU7Hr1G091210.4	Barley	nucleus, plastid	25.27	28.99
HORVU7Hr1G108410.1	Barley	nucleus	21.25	26.61
HORVU7Hr1G108280.4	Barley	nucleus, plastid	25.27	25.84
HORVU2Hr1G098930.3	Barley	nucleus	25.64	25.36
HORVU3Hr1G068900.3	Barley	nucleus, plastid	20.15	18.77

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287M918	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
EnsemblPlantsGene:HORVU3Hr1G091000	EnsemblPlants:HORVU3Hr1G091000.8	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF347	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000B47BE32	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:634188868..634191543

Molecular Weight (calculated)

30962.8 Da

IEP (calculated)

7.878

GRAVY (calculated)

-0.763

Length

273 amino acids

Sequence
(BLAST)

001: PHHHSSSSHG GLLYSSASPF PFPFPTTTTT TAIPQSHHAR TGPQSARRYE PFLAPPEEEG GRGMGRGKIE IKRIENQSNR QVTFSKRKNG ILKKAKEISV
101: LCDAEVGVVV FSSAGKLYDF CSPKTSLSRI LEKYQTNSGK ILWDEKHKSL SAEIDRIKKE NDNMQIELRH LKGEDLNSLQ PKELIMIEEA LDNGLTSLHE
201: KQQMEHYDRL MKHGKMLEDE NKLLAFKVHQ HDIALSGSMR DLELGYHPDR DFAAQMPITF RVQPSHPNLQ EDT

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.