Factsheet for Os01t0883100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0640100-01
Os04t0654700-02
Os06t0712700-01
Os08t0531700-01
Os09t0507200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	Os04t0654700-02	AT1G22920.1	21798944
AT5G20240.1	Os08t0531700-01	AT3G02310.1	15604664
AT5G20240.1	Os09t0507200-01	AT3G02310.1	15604664
AT5G20240.1	Os06t0712700-01	AT3G54340.1	15604664
AT5G20240.1	Os03t0640100-01	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01864	Sorghum	nucleus	91.87	91.87
TraesCS3A01G406500.2	Wheat	nucleus	87.56	87.56
TraesCS3D01G401700.1	Wheat	nucleus	87.08	87.08
TraesCS3B01G440200.3	Wheat	nucleus	88.04	85.98
Zm00001d042618_P001	Maize	nucleus	91.39	84.89
Os05t0423400-01	Rice	nucleus	83.25	80.93
HORVU3Hr1G091000.8	Barley	nucleus, plastid	87.56	67.03
GSMUA_Achr6P18670_001	Banana	nucleus	67.46	66.82
GSMUA_Achr5P01230_001	Banana	nucleus	66.99	66.35
Bra002285.1-P	Field mustard	nucleus	42.11	60.27
KRH64611	Soybean	nucleus	52.15	60.22
KRH16433	Soybean	nucleus	58.37	58.65
KRH53304	Soybean	nucleus	50.72	58.56
KRH18034	Soybean	nucleus	57.89	58.17
VIT_18s0001g01760.t01	Wine grape	nucleus	57.89	57.08
CDY35823	Canola	nucleus	40.67	55.19
Solyc06g059970.2.1	Tomato	nucleus	56.46	55.14
CDY60377	Canola	nucleus	52.63	54.19
CDX88846	Canola	nucleus	52.63	54.19
CDX92479	Canola	nucleus	39.71	53.9
CDY45099	Canola	nucleus	52.15	53.69
Bra020093.1-P	Field mustard	nucleus	51.67	53.2
AT5G20240.1	Thale cress	nucleus	52.63	52.88
Bra006549.1-P	Field mustard	nucleus	52.63	52.88
Solyc08g067230.2.1	Tomato	nucleus	50.24	50.0
PGSC0003DMT400019070	Potato	nucleus	49.76	49.52
Os06t0712700-01	Rice	nucleus	38.28	35.71
PGSC0003DMT400019069	Potato	cytosol	9.57	33.33
Os02t0170300-01	Rice	nucleus	41.15	33.08
Os04t0614100-00	Rice	nucleus	27.27	32.02
Os06t0667200-01	Rice	nucleus	33.01	31.22
Os01t0726400-01	Rice	nucleus	27.27	29.08

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4325001	ProteinID:AAK17066.1	EMBL:AF095645	EMBL:AK070894
EMBL:AY551924	ProteinID:BAB90370.1	ProteinID:BAF06926.1	ProteinID:BAS75578.1	ncoils:Coil	ProteinID:EEE55765.1
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010097
GO:GO:0030154	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
EMBL:L37526	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os01g0883100	EnsemblPlants:Os01t0883100-01	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF347
UniProt:Q40702	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00000ACE6C	RefSeq:XP_015623988.1	:	:	:	:

Description

MADS BOX GENE 2Similar to PISTILLATA-like MADS box protein. (Os01t0883100-01)

Coordinates

chr1:-:38321342..38323892

Molecular Weight (calculated)

24159.0 Da

IEP (calculated)

7.703

GRAVY (calculated)

-0.707

Length

209 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSTNRQVT FSKRRSGILK KAREISVLCD AEVGVVIFSS AGKLYDYCSP KTSLSRILEK YQTNSGKILW DEKHKSLSAE IDRIKKENDN
101: MQIELRHLKG EDLNSLQPKE LIMIEEALDN GIVNVNDKLM DHWERHVRTD KMLEDENKLL AFKLHQQDIA LSGSMRDLEL GYHPDRDFAA QMPITFRVQP
201: SHPNLQENN

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.