Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0640100-01 | |
| Os04t0654700-02 | |
| Os06t0712700-01 | |
| Os08t0531700-01 | |
| Os09t0507200-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G264300.1 | Wheat | nucleus | 82.33 | 85.1 |
| TraesCS1B01G275000.1 | Wheat | nucleus | 81.4 | 84.13 |
| Os01t0883100-01 | Rice | nucleus | 80.93 | 83.25 |
| Zm00001d010232_P001 | Maize | nucleus | 80.47 | 81.6 |
| EES18254 | Sorghum | nucleus | 79.53 | 80.66 |
| HORVU1Hr1G063620.1 | Barley | nucleus | 81.86 | 78.92 |
| TraesCS1D01G264500.1 | Wheat | nucleus | 71.63 | 70.64 |
| Zm00001d010233_P004 | Maize | nucleus | 80.0 | 67.19 |
| GSMUA_Achr6P18670_001 | Banana | nucleus | 64.65 | 65.88 |
| GSMUA_Achr5P01230_001 | Banana | nucleus | 64.19 | 65.4 |
| KRH64611 | Soybean | nucleus | 50.23 | 59.67 |
| KRH53304 | Soybean | nucleus | 50.23 | 59.67 |
| VIT_18s0001g01760.t01 | Wine grape | nucleus | 58.14 | 58.96 |
| Bra002285.1-P | Field mustard | nucleus | 40.0 | 58.9 |
| KRH16433 | Soybean | nucleus | 56.74 | 58.65 |
| KRH18034 | Soybean | nucleus | 56.28 | 58.17 |
| Solyc06g059970.2.1 | Tomato | nucleus | 53.95 | 54.21 |
| CDY35823 | Canola | nucleus | 38.6 | 53.9 |
| CDY60377 | Canola | nucleus | 50.23 | 53.2 |
| CDX88846 | Canola | nucleus | 50.23 | 53.2 |
| CDX92479 | Canola | nucleus | 37.67 | 52.6 |
| AT5G20240.1 | Thale cress | nucleus | 50.7 | 52.4 |
| CDY45099 | Canola | nucleus | 49.3 | 52.22 |
| Bra020093.1-P | Field mustard | nucleus | 48.84 | 51.72 |
| Bra006549.1-P | Field mustard | nucleus | 49.77 | 51.44 |
| PGSC0003DMT400019070 | Potato | nucleus | 48.84 | 50.0 |
| Solyc08g067230.2.1 | Tomato | nucleus | 48.84 | 50.0 |
| Os06t0712700-01 | Rice | nucleus | 35.81 | 34.38 |
| PGSC0003DMT400019069 | Potato | cytosol | 8.84 | 31.67 |
| Os02t0170300-01 | Rice | nucleus | 38.14 | 31.54 |
| Os04t0614100-00 | Rice | nucleus | 26.05 | 31.46 |
| Os06t0667200-01 | Rice | nucleus | 32.09 | 31.22 |
| Os01t0726400-01 | Rice | nucleus | 27.44 | 30.1 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:AAV24770.1 | EMBL:AK100233 | ProteinID:BAF17504.1 | ProteinID:BAS94096.1 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0010093 | GO:GO:0010097 | GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | EMBL:L37527 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os05g0423400 | EnsemblPlants:Os05t0423400-01 |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF211 | UniProt:Q40703 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000044D452 | : | : | : | : |
Description
MADS BOX GENE 4Similar to PISTILLATA-like MADS box protein. (Os05t0423400-01)
Coordinates
chr5:+:20759526..20761828
Molecular Weight (calculated)
24909.9 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.797
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENSTNRQVT FSKRRAGILK KAREIGVLCD AEVGVVIFSS AGKLSDYCTP KTTSVFPPLS RILEKYQTNS GKILWDEKHK SLSAEIDRVK
101: KENDNMQIEL RHMKGEDLNS LQPKELIAIE EALNNGQANL RDKMMDHWRM HKRNEKMLED EHKMLAFRVH QQEVELSGGI RELELGYHHD DRDFAASMPF
201: TFRVQPSHPN LQQEK
101: KENDNMQIEL RHMKGEDLNS LQPKELIAIE EALNNGQANL RDKMMDHWRM HKRNEKMLED EHKMLAFRVH QQEVELSGGI RELELGYHHD DRDFAASMPF
201: TFRVQPSHPN LQQEK
001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
Arabidopsis Description
PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.