Factsheet for TraesCS1B01G275000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS5A01G286800.1
TraesCS5B01G286100.2
TraesCS5B01G378700.1
TraesCS5D01G294500.1
TraesCS5D01G385600.1
TraesCS5D01G385800.1
TraesCS6A01G131100.1
TraesCS6B01G159400.1
TraesCS6D01G120900.1
TraesCS7A01G260600.1
TraesCS7A01G383800.1
TraesCS7B01G158600.1
TraesCS7B01G286600.2
TraesCS7D01G261600.1
TraesCS7D01G380300.1
TraesCSU01G072700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT5G20240.1	TraesCS2D01G505300.1	AT1G22920.1	21798944
AT5G20240.1	TraesCS5A01G286800.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS5B01G286100.2	AT3G02310.1	15604664
AT5G20240.1	TraesCS5D01G294500.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS7A01G260600.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS7B01G158600.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS7D01G261600.1	AT3G02310.1	15604664
AT5G20240.1	TraesCS6A01G131100.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS6B01G159400.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS6D01G120900.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS7A01G383800.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS7B01G286600.2	AT3G54340.1	15604664
AT5G20240.1	TraesCS7D01G380300.1	AT3G54340.1	15604664
AT5G20240.1	TraesCS5B01G378700.1	AT5G58230.1	23778966
AT5G20240.1	TraesCS5D01G385600.1	AT5G58230.1	23778966
AT5G20240.1	TraesCS5D01G385800.1	AT5G58230.1	23778966
AT5G20240.1	TraesCSU01G072700.1	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G264300.1	Wheat	nucleus	99.04	99.04
HORVU1Hr1G063620.1	Barley	nucleus	98.08	91.48
Os05t0423400-01	Rice	nucleus	84.13	81.4
Zm00001d010232_P001	Maize	nucleus	79.81	78.3
TraesCS1D01G264500.1	Wheat	nucleus	81.73	77.98
EES18254	Sorghum	nucleus	78.37	76.89
TraesCS3B01G440200.3	Wheat	nucleus	75.96	73.83
Zm00001d010233_P004	Maize	nucleus	78.37	63.67
GSMUA_Achr5P01230_001	Banana	nucleus	63.46	62.56
GSMUA_Achr6P18670_001	Banana	nucleus	63.46	62.56
Bra002285.1-P	Field mustard	nucleus	40.87	58.22
KRH16433	Soybean	nucleus	57.69	57.69
KRH18034	Soybean	nucleus	57.21	57.21
VIT_18s0001g01760.t01	Wine grape	nucleus	58.17	57.08
KRH64611	Soybean	nucleus	48.56	55.8
KRH53304	Soybean	nucleus	48.08	55.25
CDY35823	Canola	nucleus	39.42	53.25
CDY60377	Canola	nucleus	51.92	53.2
CDX88846	Canola	nucleus	51.92	53.2
AT5G20240.1	Thale cress	nucleus	52.4	52.4
CDY45099	Canola	nucleus	50.96	52.22
CDX92479	Canola	nucleus	38.46	51.95
Solyc06g059970.2.1	Tomato	nucleus	53.37	51.87
Bra020093.1-P	Field mustard	nucleus	50.48	51.72
Bra006549.1-P	Field mustard	nucleus	51.44	51.44
Solyc08g067230.2.1	Tomato	nucleus	49.52	49.05
PGSC0003DMT400019070	Potato	nucleus	49.52	49.05
TraesCS6B01G186700.1	Wheat	nucleus	38.94	32.02
TraesCS7B01G286600.2	Wheat	nucleus	35.1	31.88
TraesCS3B01G318300.1	Wheat	cytosol	29.81	31.63
PGSC0003DMT400019069	Potato	cytosol	8.65	30.0
TraesCS6B01G159400.1	Wheat	nucleus	29.81	26.84
TraesCS2B01G440900.1	Wheat	nucleus	32.21	26.48
TraesCS3B01G105700.2	Wheat	nucleus	27.88	25.55
TraesCS7B01G377700.1	Wheat	nucleus	24.04	22.12

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010093	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF211	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS1B01G275000	EnsemblPlants:TraesCS1B01G275000.1	TIGR:cd00265	:

Description

No Description!

Coordinates

chr1B:+:482451150..482452768

Molecular Weight (calculated)

24363.4 Da

IEP (calculated)

9.655

GRAVY (calculated)

-0.876

Length

208 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSSNRQVT FAKRRAGLVK KAREIGVLCD AEVGVVIFSS AGKLYDFWTP KTTLPRILEK YQTNSGKILW DEKHKSISAE IDRVKKENDN
101: MQIELRHMKG EDVNSLQPKE LIAIEEALTN GQTSLRDKMM DHWKMHRRNE KMLEEEHKLL ALRMHQQDDL SSNMREMELG YHQGRDFTSQ MPFTFRLQPS
201: HPNLQEDK

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.