Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G378700.1 | Wheat | nucleus | 99.77 | 99.77 |
| TraesCSU01G072700.1 | Wheat | nucleus | 99.53 | 99.53 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 50.23 | 96.41 |
| Os03t0640100-01 | Rice | cytosol | 95.33 | 95.33 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 25.0 | 91.45 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 87.62 | 88.65 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 86.92 | 87.74 |
| KRH42369 | Soybean | nucleus | 86.22 | 86.82 |
| PGSC0003DMT400061016 | Potato | cytosol | 85.98 | 86.79 |
| AT5G58230.1 | Thale cress | nucleus | 85.75 | 86.56 |
| KRH58491 | Soybean | nucleus | 85.75 | 86.35 |
| Solyc01g104510.2.1 | Tomato | nucleus | 85.51 | 86.32 |
| CDY02805 | Canola | nucleus | 77.34 | 79.0 |
| CDY43875 | Canola | nucleus | 78.27 | 78.64 |
| Bra002667.1-P | Field mustard | nucleus | 76.87 | 77.23 |
| CDY62688 | Canola | nucleus | 76.87 | 77.23 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 74.53 | 75.95 |
| CDY32715 | Canola | nucleus | 73.13 | 75.24 |
| Bra020379.1-P | Field mustard | cytosol | 73.13 | 75.24 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 95.79 | 67.43 |
| CDY58569 | Canola | cytosol | 83.41 | 56.13 |
| CDX88663 | Canola | nucleus | 83.41 | 56.13 |
| TraesCS5D01G337800.1 | Wheat | cytosol | 50.93 | 53.96 |
| TraesCS3D01G251300.2 | Wheat | nucleus | 32.24 | 29.3 |
| TraesCS3D01G373900.1 | Wheat | cytosol | 17.99 | 24.29 |
| TraesCS4D01G126000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 24.53 | 21.78 |
Protein Annotations
| MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 |
| PFAM:PF12265 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 |
| PANTHER:PTHR22850:SF82 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS5D01G385600 | EnsemblPlants:TraesCS5D01G385600.1 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:+:454808255..454812270
Molecular Weight (calculated)
48324.2 Da
IEP (calculated)
4.535
GRAVY (calculated)
-0.506
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKAGGGDEE EFRAEVEERL INEEYKIWKK NTPFLYDLVI THALEWPSLT VQWLPDRTEP AGKDHSVQKM VLGTHTSDNE PNYLMLAQVQ LPLDDAEADA
101: RHYDDDHADI GGFGAASGKV QIVQQINHDG EVNRARYMPQ NSFIIATKTV SAEVYVFDYS KHPSKPPLDG ACNPDLRLKG HNSEGYGLSW SIFKEGHLLS
201: GSDDAQICLW DITANGKNKT LDAYQIFKFH DGVVEDVAWH LRHEYLFGSV GDDHHLLIWD MRSPAPTKPV QSVVAHQGEV NCLAFNPFNE WVVATGSTDK
301: TVKLFDLRKI DTSLHTFDCH KEEVFQVGWS PKNETILASC CLGRRLMVWD LSRIDQEQTP EDAEDGPPEL LFIHGGHTSK ISDFSWNPCE DWVLASVAED
401: NILQIWQMAE NIYHDEDDLP SDEPAKAS
101: RHYDDDHADI GGFGAASGKV QIVQQINHDG EVNRARYMPQ NSFIIATKTV SAEVYVFDYS KHPSKPPLDG ACNPDLRLKG HNSEGYGLSW SIFKEGHLLS
201: GSDDAQICLW DITANGKNKT LDAYQIFKFH DGVVEDVAWH LRHEYLFGSV GDDHHLLIWD MRSPAPTKPV QSVVAHQGEV NCLAFNPFNE WVVATGSTDK
301: TVKLFDLRKI DTSLHTFDCH KEEVFQVGWS PKNETILASC CLGRRLMVWD LSRIDQEQTP EDAEDGPPEL LFIHGGHTSK ISDFSWNPCE DWVLASVAED
401: NILQIWQMAE NIYHDEDDLP SDEPAKAS
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.