Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 nucleus: 26228564 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G383600.1 | Wheat | cytosol | 100.0 | 100.0 |
| HORVU2Hr1G089070.1 | Barley | cytosol | 97.78 | 97.78 |
| TraesCS2D01G379700.1 | Wheat | cytosol, golgi, unclear | 97.78 | 97.78 |
| TraesCS6B01G256900.1 | Wheat | cytosol | 96.3 | 97.74 |
| HORVU2Hr1G089090.1 | Barley | cytosol | 97.04 | 97.04 |
| Os02t0622300-00 | Rice | nucleus, plasma membrane | 94.07 | 94.78 |
| Zm00001d006287_P001 | Maize | plastid | 92.59 | 93.28 |
| EER97137 | Sorghum | cytosol | 92.59 | 93.28 |
| PGSC0003DMT400038120 | Potato | cytosol | 90.37 | 91.04 |
| Solyc06g008260.2.1 | Tomato | nucleus | 88.89 | 89.55 |
| Solyc06g083820.2.1 | Tomato | nucleus | 87.41 | 88.72 |
| Solyc09g066430.2.1 | Tomato | nucleus | 86.67 | 87.97 |
| PGSC0003DMT400051917 | Potato | cytosol | 86.67 | 87.97 |
| PGSC0003DMT400026640 | Potato | cytosol | 86.67 | 87.97 |
| KRH38094 | Soybean | cytosol | 66.67 | 82.57 |
| AT2G20450.1 | Thale cress | cytosol | 81.48 | 82.09 |
| KRH34419 | Soybean | cytosol | 80.0 | 81.82 |
| KRH31676 | Soybean | cytosol | 80.0 | 81.82 |
| KRH65621 | Soybean | cytosol | 65.19 | 81.48 |
| Bra026380.1-P | Field mustard | cytosol | 80.74 | 81.34 |
| Bra019070.1-P | Field mustard | cytosol | 80.74 | 81.34 |
| Bra010412.1-P | Field mustard | cytosol | 80.74 | 81.34 |
| KRG92367 | Soybean | cytosol | 79.26 | 81.06 |
| AT4G27090.1 | Thale cress | cytosol | 80.0 | 80.6 |
| KRH07303 | Soybean | cytosol | 60.74 | 78.85 |
| Solyc07g042840.1.1 | Tomato | cytosol | 51.85 | 76.92 |
| GSMUA_Achr8P19000_001 | Banana | mitochondrion | 88.89 | 74.53 |
| Zm00001d021445_P001 | Maize | plastid | 91.85 | 72.51 |
| GSMUA_Achr11P... | Banana | mitochondrion | 88.15 | 70.0 |
| CDY46665 | Canola | cytosol, mitochondrion | 80.74 | 68.55 |
| CDX97376 | Canola | endoplasmic reticulum, mitochondrion | 80.74 | 67.7 |
| VIT_11s0118g00670.t01 | Wine grape | cytosol, endoplasmic reticulum, mitochondrion, plastid | 87.41 | 65.92 |
| CDX89280 | Canola | golgi, mitochondrion | 80.74 | 65.27 |
| CDY29273 | Canola | extracellular | 80.74 | 64.12 |
| Bra038852.1-P | Field mustard | cytosol | 74.07 | 64.1 |
| CDX92779 | Canola | cytosol | 80.74 | 63.37 |
| KRH69103 | Soybean | nucleus | 80.74 | 62.29 |
| CDY12859 | Canola | mitochondrion | 26.67 | 62.07 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 88.89 | 60.3 |
| CDY14284 | Canola | cytosol | 80.74 | 57.37 |
| CDX82664 | Canola | cytosol, plastid | 79.26 | 56.32 |
| VIT_05s0049g01310.t01 | Wine grape | plastid | 87.41 | 53.64 |
| KRH51968 | Soybean | mitochondrion | 25.93 | 50.72 |
| CDY39140 | Canola | mitochondrion | 53.33 | 47.06 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 85.19 | 34.53 |
Protein Annotations
| MapMan:17.1.2.1.15 | Gene3D:2.30.30.30 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014722 |
| PFAM:PF01929 | PANTHER:PTHR11127 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L14e_dom | SUPFAM:SSF50104 | EnsemblPlantsGene:TraesCS2B01G400600 |
| EnsemblPlants:TraesCS2B01G400600.1 | InterPro:Translation_prot_SH3-like_sf | TIGR:cd06088 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2B:+:569017147..569019202
Molecular Weight (calculated)
15490.3 Da
IEP (calculated)
10.933
GRAVY (calculated)
-0.280
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFKRFVEIG RVALVNYGKD YGRLVVIVDV VDQNRALVDA PDMVRCQMNF KRLSLTDIKI DIKRIPKKAT LIKAMEEADV KTKWENSSWG KKLVVQKRRA
101: SLNDFDRFKV MLAKIKRGGA IRQELAKLKK EVAAA
101: SLNDFDRFKV MLAKIKRGGA IRQELAKLKK EVAAA
001: MGFKRFVEIG RVALVNYGED YGKLVVIVDV VDQNRALVDA PDMERIQMNL KRLSLTDIVI DINRVPKKKV LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: ALNDFDRFKI MLAKIKRAGI VRQELAKLKR EIAA
101: ALNDFDRFKI MLAKIKRAGI VRQELAKLKR EIAA
Arabidopsis Description
RPL14A60S ribosomal protein L14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.