Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g075780.1.1 | |
| Solyc11g073060.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27090.1 | Solyc06g075780.1.1 | AT3G46090.1 | 17259181 |
| AT4G27090.1 | Solyc11g073060.1.1 | AT3G46090.1 | 17259181 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400026640 | Potato | cytosol | 87.91 | 60.15 |
| Solyc09g066430.2.1 | Tomato | nucleus | 87.91 | 60.15 |
| CDY12859 | Canola | mitochondrion | 37.36 | 58.62 |
| Solyc06g008260.2.1 | Tomato | nucleus | 83.52 | 56.72 |
| Solyc06g083820.2.1 | Tomato | nucleus | 82.42 | 56.39 |
| TraesCS2D01G379700.1 | Wheat | cytosol, golgi, unclear | 78.02 | 52.59 |
| TraesCS6D01G209400.1 | Wheat | cytosol | 76.92 | 52.24 |
| TraesCS6A01G224600.1 | Wheat | cytosol | 76.92 | 52.24 |
| HORVU2Hr1G089070.1 | Barley | cytosol | 76.92 | 51.85 |
| HORVU2Hr1G089090.1 | Barley | cytosol | 76.92 | 51.85 |
| EES12512 | Sorghum | cytosol | 76.92 | 51.85 |
| HORVU6Hr1G058560.3 | Barley | cytosol | 76.92 | 51.85 |
| TraesCS2A01G383600.1 | Wheat | cytosol | 76.92 | 51.85 |
| TraesCS2B01G400600.1 | Wheat | cytosol, golgi, nucleus, unclear | 76.92 | 51.85 |
| Os02t0622300-00 | Rice | nucleus, plasma membrane | 75.82 | 51.49 |
| TraesCS6B01G256900.1 | Wheat | cytosol | 74.73 | 51.13 |
| Zm00001d025857_P001 | Maize | cytosol, extracellular, plastid | 75.82 | 51.11 |
| Os04t0515300-02 | Rice | cytosol | 74.73 | 50.75 |
| AT4G27090.1 | Thale cress | cytosol | 74.73 | 50.75 |
| EER97137 | Sorghum | cytosol | 74.73 | 50.75 |
| AT2G20450.1 | Thale cress | cytosol | 74.73 | 50.75 |
| Zm00001d006287_P001 | Maize | plastid | 73.63 | 50.0 |
| Bra010412.1-P | Field mustard | cytosol | 73.63 | 50.0 |
| Bra019070.1-P | Field mustard | cytosol | 73.63 | 50.0 |
| Bra026380.1-P | Field mustard | cytosol | 73.63 | 50.0 |
| GSMUA_Achr8P19000_001 | Banana | mitochondrion | 78.02 | 44.1 |
| Bra038852.1-P | Field mustard | cytosol | 73.63 | 42.95 |
| CDY46665 | Canola | cytosol, mitochondrion | 73.63 | 42.14 |
| GSMUA_Achr11P... | Banana | mitochondrion | 78.02 | 41.76 |
| CDX97376 | Canola | endoplasmic reticulum, mitochondrion | 73.63 | 41.61 |
| CDX89280 | Canola | golgi, mitochondrion | 73.63 | 40.12 |
| CDY29273 | Canola | extracellular | 73.63 | 39.41 |
| Zm00001d021445_P001 | Maize | plastid | 73.63 | 39.18 |
| CDX92779 | Canola | cytosol | 73.63 | 38.95 |
| CDX82664 | Canola | cytosol, plastid | 73.63 | 35.26 |
| CDY14284 | Canola | cytosol | 73.63 | 35.26 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 76.92 | 35.18 |
| Zm00001d047509_P001 | Maize | cytosol | 43.96 | 35.09 |
| Zm00001d050675_P001 | Maize | cytosol | 39.56 | 31.58 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 75.82 | 20.72 |
| CDY39140 | Canola | mitochondrion | 34.07 | 20.26 |
Protein Annotations
| MapMan:17.1.2.1.15 | Gene3D:2.30.30.30 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0042273 | InterPro:IPR014722 | UniProt:K4CEE4 |
| PFAM:PF01929 | PANTHER:PTHR11127 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L14e_dom | SUPFAM:SSF50104 | EnsemblPlantsGene:Solyc07g042840.1 |
| EnsemblPlants:Solyc07g042840.1.1 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000276C1DF | : | : | : |
Description
No Description!
Coordinates
chr7:-:56368402..56368677
Molecular Weight (calculated)
10717.5 Da
IEP (calculated)
11.627
GRAVY (calculated)
-0.430
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MVRSHMNFKM LSLTDINIDI KRNPKKKTLV EAMEAADVKT KWVNNSWERK LIVQKRRAAL NHFDRFKLML AKIKRVGVVR QELAKLKKTV A
001: MGFKRFVEIG RVALVNYGED YGKLVVIVDV VDQNRALVDA PDMERIQMNL KRLSLTDIVI DINRVPKKKV LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: ALNDFDRFKI MLAKIKRAGI VRQELAKLKR EIAA
101: ALNDFDRFKI MLAKIKRAGI VRQELAKLKR EIAA
Arabidopsis Description
RPL14A60S ribosomal protein L14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.