Factsheet for Zm00001d025857_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12512	Sorghum	cytosol	98.52	98.52
Os04t0515300-02	Rice	cytosol	96.3	97.01
Zm00001d006287_P001	Maize	plastid	93.33	94.03
PGSC0003DMT400038120	Potato	cytosol	87.41	88.06
Solyc09g066430.2.1	Tomato	nucleus	85.93	87.22
PGSC0003DMT400026640	Potato	cytosol	85.93	87.22
Solyc06g008260.2.1	Tomato	nucleus	85.93	86.57
Solyc06g083820.2.1	Tomato	nucleus	85.19	86.47
PGSC0003DMT400051917	Potato	cytosol	84.44	85.71
KRH38094	Soybean	cytosol	68.89	85.32
KRH34419	Soybean	cytosol	82.96	84.85
KRH65621	Soybean	cytosol	67.41	84.26
KRG92367	Soybean	cytosol	81.48	83.33
KRH31676	Soybean	cytosol	81.48	83.33
AT2G20450.1	Thale cress	cytosol	81.48	82.09
KRH07303	Soybean	cytosol	62.96	81.73
Bra026380.1-P	Field mustard	cytosol	80.74	81.34
Bra019070.1-P	Field mustard	cytosol	80.74	81.34
Bra010412.1-P	Field mustard	cytosol	80.74	81.34
AT4G27090.1	Thale cress	cytosol	80.0	80.6
Solyc07g042840.1.1	Tomato	cytosol	51.11	75.82
GSMUA_Achr8P19000_001	Banana	mitochondrion	90.37	75.78
Zm00001d021445_P001	Maize	plastid	91.85	72.51
GSMUA_Achr11P...	Banana	mitochondrion	89.63	71.18
CDY46665	Canola	cytosol, mitochondrion	80.74	68.55
CDX97376	Canola	endoplasmic reticulum, mitochondrion	80.74	67.7
VIT_11s0118g00670.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	89.63	67.6
CDX89280	Canola	golgi, mitochondrion	80.74	65.27
CDY29273	Canola	extracellular	80.74	64.12
Bra038852.1-P	Field mustard	cytosol	74.07	64.1
KRH69103	Soybean	nucleus	82.22	63.43
CDX92779	Canola	cytosol	80.74	63.37
CDY12859	Canola	mitochondrion	26.67	62.07
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	90.37	61.31
CDY14284	Canola	cytosol	80.74	57.37
CDX82664	Canola	cytosol, plastid	79.26	56.32
KRH51968	Soybean	mitochondrion	28.15	55.07
VIT_05s0049g01310.t01	Wine grape	plastid	88.15	54.09
Zm00001d050675_P001	Maize	cytosol	42.96	50.88
Zm00001d047509_P001	Maize	cytosol	40.0	47.37
CDY39140	Canola	mitochondrion	53.33	47.06
GSMUA_AchrUn_...	Banana	mitochondrion	87.41	35.44

Protein Annotations

EntrezGene:100192625	MapMan:17.1.2.1.15	Gene3D:2.30.30.30	ProteinID:AQK44892.1	UniProt:B4FC17	EMBL:BT034655
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	PFAM:PF01929	PANTHER:PTHR11127	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L14e_dom	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00017B6475	EnsemblPlantsGene:Zm00001d025857	EnsemblPlants:Zm00001d025857_P001
EnsemblPlants:Zm00001d025857_T001	SEG:seg	:	:	:	:

Description

60S ribosomal protein L14-1

Coordinates

chr10:-:131577849..131579681

Molecular Weight (calculated)

15462.3 Da

IEP (calculated)

11.018

GRAVY (calculated)

-0.260

Length

135 amino acids

Sequence
(BLAST)

001: MPFKRFVEIG RVALVNYGKE YGRLVVIVDV VDQNRALVDA PDMVRCQMNF KRLSLTDIKI DIKRVPKKTT LIKAMEEADV KSKWENSSWG KKLIVQKRRA
101: SLNDFDRFKV MLAKIKRGGA IRQELAKLKK VAAAA

Best Arabidopsis Sequence Match ( AT2G20450.1 )
(BLAST)

001: MGFKRFVEIG RVALVNYGED YGKLVVIVDV VDQNRALVDA PDMERIQMNL KRLSLTDIVI DINRVPKKKV LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: ALNDFDRFKI MLAKIKRAGI VRQELAKLKR EIAA

Arabidopsis Description

RPL14A60S ribosomal protein L14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.