Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g008260.2.1 | Tomato | nucleus | 98.51 | 98.51 |
| PGSC0003DMT400051917 | Potato | cytosol | 96.27 | 96.99 |
| PGSC0003DMT400026640 | Potato | cytosol | 94.03 | 94.74 |
| TraesCS6D01G209400.1 | Wheat | cytosol | 91.04 | 91.04 |
| TraesCS6A01G224600.1 | Wheat | cytosol | 91.04 | 91.04 |
| TraesCS2A01G383600.1 | Wheat | cytosol | 91.04 | 90.37 |
| TraesCS2B01G400600.1 | Wheat | cytosol, golgi, nucleus, unclear | 91.04 | 90.37 |
| HORVU2Hr1G089070.1 | Barley | cytosol | 90.3 | 89.63 |
| TraesCS2D01G379700.1 | Wheat | cytosol, golgi, unclear | 90.3 | 89.63 |
| HORVU2Hr1G089090.1 | Barley | cytosol | 89.55 | 88.89 |
| HORVU6Hr1G058560.3 | Barley | cytosol | 89.55 | 88.89 |
| Os04t0515300-02 | Rice | cytosol | 88.81 | 88.81 |
| TraesCS6B01G256900.1 | Wheat | cytosol | 88.06 | 88.72 |
| EES12512 | Sorghum | cytosol | 88.81 | 88.15 |
| Os02t0622300-00 | Rice | nucleus, plasma membrane | 88.06 | 88.06 |
| Zm00001d025857_P001 | Maize | cytosol, extracellular, plastid | 88.06 | 87.41 |
| Zm00001d006287_P001 | Maize | plastid | 86.57 | 86.57 |
| EER97137 | Sorghum | cytosol | 86.57 | 86.57 |
| Bra026380.1-P | Field mustard | cytosol | 85.07 | 85.07 |
| Bra019070.1-P | Field mustard | cytosol | 85.07 | 85.07 |
| Bra010412.1-P | Field mustard | cytosol | 85.07 | 85.07 |
| AT2G20450.1 | Thale cress | cytosol | 85.07 | 85.07 |
| AT4G27090.1 | Thale cress | cytosol | 84.33 | 84.33 |
| GSMUA_Achr8P19000_001 | Banana | mitochondrion | 89.55 | 74.53 |
| CDY46665 | Canola | cytosol, mitochondrion | 85.07 | 71.7 |
| CDX97376 | Canola | endoplasmic reticulum, mitochondrion | 85.07 | 70.81 |
| GSMUA_Achr11P... | Banana | mitochondrion | 89.55 | 70.59 |
| CDX89280 | Canola | golgi, mitochondrion | 85.07 | 68.26 |
| Bra038852.1-P | Field mustard | cytosol | 78.36 | 67.31 |
| Zm00001d021445_P001 | Maize | plastid | 85.82 | 67.25 |
| CDY29273 | Canola | extracellular | 85.07 | 67.06 |
| CDX92779 | Canola | cytosol | 85.07 | 66.28 |
| CDY12859 | Canola | mitochondrion | 28.36 | 65.52 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 90.3 | 60.8 |
| CDY14284 | Canola | cytosol | 85.07 | 60.0 |
| CDX82664 | Canola | cytosol, plastid | 83.58 | 58.95 |
| CDY39140 | Canola | mitochondrion | 53.73 | 47.06 |
| Zm00001d050675_P001 | Maize | cytosol | 38.81 | 45.61 |
| Zm00001d047509_P001 | Maize | cytosol | 38.06 | 44.74 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 85.82 | 34.53 |
Protein Annotations
| EntrezGene:102591316 | MapMan:17.1.2.1.15 | Gene3D:2.30.30.30 | ProteinID:ABA40467 | ProteinID:ABA40467.1 | EMBL:DQ191666 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014722 | RefSeq:NP_001275005.1 | PFAM:PF01929 | EnsemblPlantsGene:PGSC0003DMG400014700 |
| PGSC:PGSC0003DMG400014700 | EnsemblPlants:PGSC0003DMT400038120 | PANTHER:PTHR11127 | UniProt:Q3HVK7 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L14e_dom |
| SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI00005BA456 | SEG:seg | : | : |
Description
Glycoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400014700]
Coordinates
chr6:-:1774928..1778363
Molecular Weight (calculated)
15416.3 Da
IEP (calculated)
11.166
GRAVY (calculated)
-0.231
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFKRFVEIG RVALVNYGKD YGRLVVIVDV IDQNRALVDA PDMVRSQMNF KRLSLTDIKI DIKRIPKKKT LIAAMEAADV KTKWESSSWG RKLIVQKRRA
101: SLNDFDRFKL MLAKIKRAGV VRQELAKLKK EVAA
101: SLNDFDRFKL MLAKIKRAGV VRQELAKLKK EVAA
001: MGFKRFVEIG RVALVNYGED YGKLVVIVDV VDQNRALVDA PDMERIQMNL KRLSLTDIVI DINRVPKKKV LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: ALNDFDRFKI MLAKIKRAGI VRQELAKLKR EIAA
101: ALNDFDRFKI MLAKIKRAGI VRQELAKLKR EIAA
Arabidopsis Description
RPL14A60S ribosomal protein L14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.