CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010412.1-P	Field mustard	cytosol	78.82	100.0
AT4G27090.1	Thale cress	cytosol	76.47	97.01
CDX97376	Canola	endoplasmic reticulum, mitochondrion	83.53	88.2
CDY46665	Canola	cytosol, mitochondrion	82.35	88.05
Solyc06g083820.2.1	Tomato	nucleus	67.65	86.47
CDX89280	Canola	golgi, mitochondrion	84.71	86.23
PGSC0003DMT400051917	Potato	cytosol	67.06	85.71
PGSC0003DMT400038120	Potato	cytosol	67.06	85.07
Solyc06g008260.2.1	Tomato	nucleus	65.88	83.58
Os04t0515300-02	Rice	cytosol	65.29	82.84
Solyc09g066430.2.1	Tomato	nucleus	64.71	82.71
PGSC0003DMT400026640	Potato	cytosol	64.71	82.71
Zm00001d006287_P001	Maize	plastid	64.71	82.09
Os02t0622300-00	Rice	nucleus, plasma membrane	64.71	82.09
EES12512	Sorghum	cytosol	64.71	81.48
CDX92779	Canola	cytosol	82.35	81.4
TraesCS6A01G224600.1	Wheat	cytosol	64.12	81.34
EER97137	Sorghum	cytosol	64.12	81.34
TraesCS6D01G209400.1	Wheat	cytosol	64.12	81.34
HORVU2Hr1G089070.1	Barley	cytosol	64.12	80.74
Zm00001d025857_P001	Maize	cytosol, extracellular, plastid	64.12	80.74
TraesCS2A01G383600.1	Wheat	cytosol	64.12	80.74
TraesCS2B01G400600.1	Wheat	cytosol, golgi, nucleus, unclear	64.12	80.74
HORVU6Hr1G058560.3	Barley	cytosol	63.53	80.0
HORVU2Hr1G089090.1	Barley	cytosol	63.53	80.0
TraesCS2D01G379700.1	Wheat	cytosol, golgi, unclear	63.53	80.0
TraesCS6B01G256900.1	Wheat	cytosol	62.35	79.7
CDY14284	Canola	cytosol	82.94	74.21
Solyc07g042840.1.1	Tomato	cytosol	39.41	73.63
CDY12859	Canola	mitochondrion	24.71	72.41
GSMUA_Achr8P19000_001	Banana	mitochondrion	67.65	71.43
GSMUA_Achr11P...	Banana	mitochondrion	69.41	69.41
CDX82664	Canola	cytosol, plastid	75.29	67.37
VIT_11s0118g00670.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	70.0	66.48
Zm00001d021445_P001	Maize	plastid	64.71	64.33
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	70.0	59.8
KRH51968	Soybean	mitochondrion	22.94	56.52
CDY39140	Canola	mitochondrion	49.41	54.9
VIT_05s0049g01310.t01	Wine grape	plastid	67.65	52.27
Zm00001d050675_P001	Maize	cytosol	27.65	41.23
Zm00001d047509_P001	Maize	cytosol	25.88	38.6
GSMUA_AchrUn_...	Banana	mitochondrion	65.88	33.63

Protein Annotations

MapMan:17.1.2.1.15	Gene3D:2.30.30.30	GO:A0A078GXC1	UniProt:A0A078GXC1	EnsemblPlants:CDY29273	ProteinID:CDY29273
ProteinID:CDY29273.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00042212001	InterPro:IPR014722	PFAM:PF01929
PANTHER:PTHR11127	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L14e_dom	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EE41D8
SEG:seg	:	:	:	:	:

Description

BnaC01g19250DBnaC01g19250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXC1]

Coordinates

chrLK032234:-:145604..147019

Molecular Weight (calculated)

19575.7 Da

IEP (calculated)

11.053

GRAVY (calculated)

-0.160

Length

170 amino acids

Sequence
(BLAST)

001: MIGGMIINEM QTKLVRRLQL PLLLHFASTF KSTAAKMVFK RYVEIGRVAL VNYGKDHGKL VVIVDVVDQN RALVDAPDME RIQMNFKRLS LTDIVIEINR
101: VPKKKALIEA MEKADVKNKW EKSSWGRKLI VQKRRASLND FDRFKIMLAK IKKAGVVRQE LAKLKKEITA

Best Arabidopsis Sequence Match ( AT4G27090.1 )
(BLAST)

001: MGFKRYVEIG RVALVNYGED HGKLVVIVDV VDQNRALVDA PDMERIQMNF KRLSLTDIVI DINRVPKKKA LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: NLNDFDRFKI MLAKIKKAGV VRQELAKLKK EITA

Arabidopsis Description

RPL14BAT4G27090 protein [Source:UniProtKB/TrEMBL;Acc:B9DHP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.