CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27090.1	KRH10294	AT3G46090.1	17259181
AT4G27090.1	KRH23029	AT3G46090.1	17259181
AT4G27090.1	KRH24840	AT3G46090.1	17259181
AT4G27090.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12859	Canola	mitochondrion	42.03	50.0
KRH34419	Soybean	cytosol	63.77	33.33
KRG92367	Soybean	cytosol	60.87	31.82
KRH31676	Soybean	cytosol	60.87	31.82
Bra010412.1-P	Field mustard	cytosol	56.52	29.1
Bra019070.1-P	Field mustard	cytosol	56.52	29.1
Bra026380.1-P	Field mustard	cytosol	56.52	29.1
Os04t0515300-02	Rice	cytosol	56.52	29.1
Os02t0622300-00	Rice	nucleus, plasma membrane	56.52	29.1
EES12512	Sorghum	cytosol	56.52	28.89
AT4G27090.1	Thale cress	cytosol	55.07	28.36
AT2G20450.1	Thale cress	cytosol	55.07	28.36
Zm00001d025857_P001	Maize	cytosol, extracellular, plastid	55.07	28.15
KRH07303	Soybean	cytosol	42.03	27.88
Zm00001d006287_P001	Maize	plastid	53.62	27.61
EER97137	Sorghum	cytosol	53.62	27.61
HORVU6Hr1G058560.3	Barley	cytosol	52.17	26.67
HORVU2Hr1G089090.1	Barley	cytosol	52.17	26.67
HORVU2Hr1G089070.1	Barley	cytosol	52.17	26.67
KRH38094	Soybean	cytosol	42.03	26.61
TraesCS6B01G256900.1	Wheat	cytosol	50.72	26.32
TraesCS6D01G209400.1	Wheat	cytosol	50.72	26.12
TraesCS6A01G224600.1	Wheat	cytosol	50.72	26.12
TraesCS2B01G400600.1	Wheat	cytosol, golgi, nucleus, unclear	50.72	25.93
TraesCS2A01G383600.1	Wheat	cytosol	50.72	25.93
KRH65621	Soybean	cytosol	40.58	25.93
TraesCS2D01G379700.1	Wheat	cytosol, golgi, unclear	49.28	25.19
Bra038852.1-P	Field mustard	cytosol	56.52	25.0
CDY46665	Canola	cytosol, mitochondrion	56.52	24.53
CDX97376	Canola	endoplasmic reticulum, mitochondrion	56.52	24.22
KRH69103	Soybean	nucleus	60.87	24.0
GSMUA_Achr8P19000_001	Banana	mitochondrion	55.07	23.6
CDX89280	Canola	golgi, mitochondrion	56.52	23.35
CDY29273	Canola	extracellular	56.52	22.94
GSMUA_Achr11P...	Banana	mitochondrion	56.52	22.94
CDX92779	Canola	cytosol	56.52	22.67
CDY14284	Canola	cytosol	56.52	20.53
Zm00001d021445_P001	Maize	plastid	50.72	20.47
CDX82664	Canola	cytosol, plastid	55.07	20.0
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	55.07	19.1
Zm00001d047509_P001	Maize	cytosol	20.29	12.28
GSMUA_AchrUn_...	Banana	mitochondrion	56.52	11.71
Zm00001d050675_P001	Maize	cytosol	8.7	5.26
CDY39140	Canola	mitochondrion	8.7	3.92
KRH16187	Soybean	mitochondrion	2.9	2.2

Protein Annotations

MapMan:17.1.2.1.15	EMBL:ACUP02003402	EnsemblPlantsGene:GLYMA_06G038800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0042273	UniProt:K7KSY1
EnsemblPlants:KRH51968	ProteinID:KRH51968	ProteinID:KRH51968.1	PFAM:PF01929	PANTHER:PTHR11127	InterPro:Ribosomal_L14e_dom
UniParc:UPI0002953228	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:2937412..2937772

Molecular Weight (calculated)

8392.9 Da

IEP (calculated)

12.910

GRAVY (calculated)

-0.480

Length

69 amino acids

Sequence
(BLAST)

1: MLLRRKILLK PWRMLMLRTS GRRVHRGRKF IFRKRRASLN DFDRFKIMLA KIKRGAVVRQ ELAKLKKSA

Best Arabidopsis Sequence Match ( AT2G20450.1 )
(BLAST)

001: MGFKRFVEIG RVALVNYGED YGKLVVIVDV VDQNRALVDA PDMERIQMNL KRLSLTDIVI DINRVPKKKV LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: ALNDFDRFKI MLAKIKRAGI VRQELAKLKR EIAA

Arabidopsis Description

RPL14A60S ribosomal protein L14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.