CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31676	Soybean	cytosol	74.86	99.24
KRH34419	Soybean	cytosol	72.0	95.45
KRH38094	Soybean	cytosol	58.29	93.58
KRG92367	Soybean	cytosol	70.29	93.18
KRH65621	Soybean	cytosol	57.14	92.59
KRH07303	Soybean	cytosol	52.57	88.46
EES12512	Sorghum	cytosol	64.0	82.96
Os04t0515300-02	Rice	cytosol	63.43	82.84
Os02t0622300-00	Rice	nucleus, plasma membrane	63.43	82.84
Zm00001d025857_P001	Maize	cytosol, extracellular, plastid	63.43	82.22
TraesCS6B01G256900.1	Wheat	cytosol	62.29	81.95
Zm00001d006287_P001	Maize	plastid	62.29	81.34
TraesCS6D01G209400.1	Wheat	cytosol	62.29	81.34
TraesCS6A01G224600.1	Wheat	cytosol	62.29	81.34
TraesCS2B01G400600.1	Wheat	cytosol, golgi, nucleus, unclear	62.29	80.74
TraesCS2A01G383600.1	Wheat	cytosol	62.29	80.74
HORVU6Hr1G058560.3	Barley	cytosol	61.71	80.0
TraesCS2D01G379700.1	Wheat	cytosol, golgi, unclear	61.71	80.0
HORVU2Hr1G089070.1	Barley	cytosol	61.71	80.0
EER97137	Sorghum	cytosol	61.14	79.85
HORVU2Hr1G089090.1	Barley	cytosol	61.14	79.26
GSMUA_Achr8P19000_001	Banana	mitochondrion	65.71	71.43
GSMUA_Achr11P...	Banana	mitochondrion	68.0	70.0
VIT_11s0118g00670.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	68.57	67.04
Zm00001d021445_P001	Maize	plastid	61.71	63.16
KRH51968	Soybean	mitochondrion	24.0	60.87
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	67.43	59.3
VIT_05s0049g01310.t01	Wine grape	plastid	66.86	53.18
KRH16187	Soybean	mitochondrion	24.57	47.25
Zm00001d050675_P001	Maize	cytosol	29.14	44.74
Zm00001d047509_P001	Maize	cytosol	25.71	39.47
GSMUA_AchrUn_...	Banana	mitochondrion	66.29	34.83

Protein Annotations

EntrezGene:100817659	MapMan:17.1.2.1.15	Gene3D:2.30.30.30	EMBL:ACUP02000689	EnsemblPlantsGene:GLYMA_02G004100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
GO:GO:0042273	InterPro:IPR014722	UniProt:K7K5S3	EnsemblPlants:KRH69103	ProteinID:KRH69103	ProteinID:KRH69103.1
PFAM:PF01929	PANTHER:PTHR11127	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L14e_dom	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002965924	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:466891..468969

Molecular Weight (calculated)

20313.2 Da

IEP (calculated)

11.398

GRAVY (calculated)

-0.298

Length

175 amino acids

Sequence
(BLAST)

001: MRVFLNSTHS FIIAASTKTL TPNLFFFLSP LQQSLQRLHN PKMPFKRYVE IGRVAQINYG KEYGRLVVIV DVIDQNRALV DAPDMVRSQV NFKRLSLTDI
101: KIDIKRIPKK KDLIQAMEAA DVKNRWEKSS WGRKLIVQKR RASLNDFDRF KIMLAKIKRA AVVRQELAKL KKSAS

Best Arabidopsis Sequence Match ( AT4G27090.1 )
(BLAST)

001: MGFKRYVEIG RVALVNYGED HGKLVVIVDV VDQNRALVDA PDMERIQMNF KRLSLTDIVI DINRVPKKKA LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: NLNDFDRFKI MLAKIKKAGV VRQELAKLKK EITA

Arabidopsis Description

RPL14BAT4G27090 protein [Source:UniProtKB/TrEMBL;Acc:B9DHP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.