Factsheet for GSMUA_Achr11P16460_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0515300-02	Rice	cytosol	61.31	91.04
Zm00001d025857_P001	Maize	cytosol, extracellular, plastid	61.31	90.37
PGSC0003DMT400038120	Potato	cytosol	60.8	90.3
Os02t0622300-00	Rice	nucleus, plasma membrane	60.8	90.3
Solyc06g083820.2.1	Tomato	nucleus	60.3	90.23
EES12512	Sorghum	cytosol	60.8	89.63
TraesCS6D01G209400.1	Wheat	cytosol	60.3	89.55
TraesCS6A01G224600.1	Wheat	cytosol	60.3	89.55
PGSC0003DMT400051917	Potato	cytosol	59.8	89.47
TraesCS2B01G400600.1	Wheat	cytosol, golgi, nucleus, unclear	60.3	88.89
TraesCS2A01G383600.1	Wheat	cytosol	60.3	88.89
Solyc06g008260.2.1	Tomato	nucleus	59.8	88.81
TraesCS2D01G379700.1	Wheat	cytosol, golgi, unclear	59.8	88.15
HORVU2Hr1G089070.1	Barley	cytosol	59.8	88.15
KRH38094	Soybean	cytosol	48.24	88.07
TraesCS6B01G256900.1	Wheat	cytosol	58.79	87.97
HORVU6Hr1G058560.3	Barley	cytosol	59.3	87.41
HORVU2Hr1G089090.1	Barley	cytosol	59.3	87.41
EER97137	Sorghum	cytosol	58.79	87.31
Zm00001d006287_P001	Maize	plastid	58.79	87.31
PGSC0003DMT400026640	Potato	cytosol	58.29	87.22
Solyc09g066430.2.1	Tomato	nucleus	58.29	87.22
KRH31676	Soybean	cytosol	57.79	87.12
KRH34419	Soybean	cytosol	57.79	87.12
KRH65621	Soybean	cytosol	47.24	87.04
Bra026380.1-P	Field mustard	cytosol	57.29	85.07
Bra019070.1-P	Field mustard	cytosol	57.29	85.07
Bra010412.1-P	Field mustard	cytosol	57.29	85.07
KRG92367	Soybean	cytosol	56.28	84.85
AT4G27090.1	Thale cress	cytosol	56.78	84.33
AT2G20450.1	Thale cress	cytosol	56.78	84.33
GSMUA_Achr8P19000_001	Banana	mitochondrion	67.84	83.85
KRH07303	Soybean	cytosol	43.72	83.65
GSMUA_Achr11P...	Banana	mitochondrion	66.33	77.65
Solyc07g042840.1.1	Tomato	cytosol	35.18	76.92
CDY46665	Canola	cytosol, mitochondrion	59.8	74.84
CDX97376	Canola	endoplasmic reticulum, mitochondrion	57.79	71.43
VIT_11s0118g00670.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	63.82	70.95
CDX92779	Canola	cytosol	61.31	70.93
CDX89280	Canola	golgi, mitochondrion	58.79	70.06
CDY29273	Canola	extracellular	59.8	70.0
Zm00001d021445_P001	Maize	plastid	59.8	69.59
Bra038852.1-P	Field mustard	cytosol	53.27	67.95
KRH69103	Soybean	nucleus	59.3	67.43
CDY12859	Canola	mitochondrion	19.6	67.24
CDY14284	Canola	cytosol	60.3	63.16
CDX82664	Canola	cytosol, plastid	58.79	61.58
VIT_05s0049g01310.t01	Wine grape	plastid	63.82	57.73
KRH51968	Soybean	mitochondrion	19.1	55.07
CDY39140	Canola	mitochondrion	39.7	51.63
Zm00001d050675_P001	Maize	cytosol	25.13	43.86
GSMUA_AchrUn_...	Banana	mitochondrion	69.35	41.44
Zm00001d047509_P001	Maize	cytosol	23.62	41.23

Protein Annotations

MapMan:17.1.2.1.15	Gene3D:2.30.30.30	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr11G16460_001	EnsemblPlants:GSMUA_Achr11P16460_001
EnsemblPlants:GSMUA_Achr11T16460_001	InterPro:IPR014722	UniProt:M0RSS6	PFAM:PF01929	PANTHER:PTHR11127	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L14e_dom	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000295A54C	:	:

Description

60S ribosomal protein L14-2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G16460_001]

Coordinates

chr11:+:18165893..18168994

Molecular Weight (calculated)

22520.9 Da

IEP (calculated)

10.994

GRAVY (calculated)

-0.333

Length

199 amino acids

Sequence
(BLAST)

001: MADQGPDPAQ VKPVRDVCTG SNVSVQTELL GFLRIRGSKW LFPPHLPLSC PLSTPRRTSP SLVLKMPFKR YVEIGRVALV NYGKEYGRLV VIVDVIDQNR
101: ALVDAPDMVR GQMNFKRLSL TDIKIDIPRV PKKKTLIDAM EAADVKNKWE KSSWGRKLIV QKRRASLNDF DRFKVMLAKI KRGGAIRQEL AKLKKENAA

Best Arabidopsis Sequence Match ( AT4G27090.1 )
(BLAST)

001: MGFKRYVEIG RVALVNYGED HGKLVVIVDV VDQNRALVDA PDMERIQMNF KRLSLTDIVI DINRVPKKKA LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: NLNDFDRFKI MLAKIKKAGV VRQELAKLKK EITA

Arabidopsis Description

RPL14BAT4G27090 protein [Source:UniProtKB/TrEMBL;Acc:B9DHP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.