Factsheet for VIT_05s0049g01310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0622300-00	Rice	nucleus, plasma membrane	54.55	89.55
Os04t0515300-02	Rice	cytosol	54.55	89.55
EES12512	Sorghum	cytosol	54.55	88.89
Zm00001d025857_P001	Maize	cytosol, extracellular, plastid	54.09	88.15
TraesCS6D01G209400.1	Wheat	cytosol	53.64	88.06
TraesCS6A01G224600.1	Wheat	cytosol	53.64	88.06
TraesCS6B01G256900.1	Wheat	cytosol	53.18	87.97
TraesCS2B01G400600.1	Wheat	cytosol, golgi, nucleus, unclear	53.64	87.41
TraesCS2A01G383600.1	Wheat	cytosol	53.64	87.41
HORVU6Hr1G058560.3	Barley	cytosol	53.18	86.67
TraesCS2D01G379700.1	Wheat	cytosol, golgi, unclear	53.18	86.67
HORVU2Hr1G089070.1	Barley	cytosol	53.18	86.67
Zm00001d006287_P001	Maize	plastid	52.73	86.57
EER97137	Sorghum	cytosol	52.73	86.57
KRH34419	Soybean	cytosol	51.82	86.36
KRH31676	Soybean	cytosol	51.82	86.36
KRH38094	Soybean	cytosol	42.73	86.24
HORVU2Hr1G089090.1	Barley	cytosol	52.73	85.93
KRH65621	Soybean	cytosol	41.82	85.19
Bra010412.1-P	Field mustard	cytosol	51.36	84.33
Bra019070.1-P	Field mustard	cytosol	51.36	84.33
Bra026380.1-P	Field mustard	cytosol	51.36	84.33
KRG92367	Soybean	cytosol	50.45	84.09
AT4G27090.1	Thale cress	cytosol	50.91	83.58
AT2G20450.1	Thale cress	cytosol	50.45	82.84
KRH07303	Soybean	cytosol	39.09	82.69
VIT_11s0118g00670.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	63.18	77.65
GSMUA_Achr8P19000_001	Banana	mitochondrion	56.36	77.02
GSMUA_Achr11P...	Banana	mitochondrion	58.64	75.88
CDY46665	Canola	cytosol, mitochondrion	53.18	73.58
CDX97376	Canola	endoplasmic reticulum, mitochondrion	52.27	71.43
Zm00001d021445_P001	Maize	plastid	55.0	70.76
CDX89280	Canola	golgi, mitochondrion	52.27	68.86
Bra038852.1-P	Field mustard	cytosol	48.18	67.95
CDY29273	Canola	extracellular	52.27	67.65
CDX92779	Canola	cytosol	52.73	67.44
KRH69103	Soybean	nucleus	53.18	66.86
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	57.73	63.82
CDY12859	Canola	mitochondrion	16.82	63.79
CDY14284	Canola	cytosol	53.64	62.11
CDX82664	Canola	cytosol, plastid	51.82	60.0
CDY39140	Canola	mitochondrion	36.82	52.94
Zm00001d050675_P001	Maize	cytosol	23.64	45.61
Zm00001d047509_P001	Maize	cytosol	21.82	42.11
GSMUA_AchrUn_...	Banana	mitochondrion	57.27	37.84

Protein Annotations

EntrezGene:100264927	wikigene:100264927	MapMan:17.1.2.1.15	Gene3D:2.30.30.30	ProteinID:CBI23666	ProteinID:CBI23666.3
UniProt:D7SZI9	EMBL:FN595496	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0042273	InterPro:IPR014722	EntrezGene:LOC100264927
wikigene:LOC100264927	PFAM:PF01929	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L14e_dom	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0001BE277B	ArrayExpress:VIT_05s0049g01310	EnsemblPlantsGene:VIT_05s0049g01310	EnsemblPlants:VIT_05s0049g01310.t01	RefSeq:XP_002285313	RefSeq:XP_002285313.1

Description

No Description!

Coordinates

chr5:-:8549803..8553417

Molecular Weight (calculated)

25040.1 Da

IEP (calculated)

11.638

GRAVY (calculated)

-0.399

Length

220 amino acids

Sequence
(BLAST)

001: MEFFNLYNLH GHKVLNQIRL ISGFNSPKKA QRASKPNTIV TQRSRTQIGP KRTIKKPRKT LSPVSPSTPL ASSIFPLPAV SRALANMPFK RYVEVGRVAL
101: VNYGKDYGRL VVIVDVIDQN RALVDAPDMV RCQMNFKRLS LTDIKIDIKR VPKKKTLIEA MTAADVKNKW ENSSWGRKLI VQKRRASLND FDRFKIMLAK
201: IKRGGVIRQE LAKLKKQTAS

Best Arabidopsis Sequence Match ( AT4G27090.1 )
(BLAST)

001: MGFKRYVEIG RVALVNYGED HGKLVVIVDV VDQNRALVDA PDMERIQMNF KRLSLTDIVI DINRVPKKKA LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: NLNDFDRFKI MLAKIKKAGV VRQELAKLKK EITA

Arabidopsis Description

RPL14BAT4G27090 protein [Source:UniProtKB/TrEMBL;Acc:B9DHP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.