Factsheet for Solyc06g008260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27090.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT4G27090.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038120	Potato	cytosol	98.51	98.51
Solyc06g083820.2.1	Tomato	nucleus	95.52	96.24
Solyc09g066430.2.1	Tomato	nucleus	92.54	93.23
TraesCS6D01G209400.1	Wheat	cytosol	89.55	89.55
TraesCS6A01G224600.1	Wheat	cytosol	89.55	89.55
TraesCS2A01G383600.1	Wheat	cytosol	89.55	88.89
TraesCS2B01G400600.1	Wheat	cytosol, golgi, nucleus, unclear	89.55	88.89
HORVU2Hr1G089070.1	Barley	cytosol	88.81	88.15
TraesCS2D01G379700.1	Wheat	cytosol, golgi, unclear	88.81	88.15
HORVU6Hr1G058560.3	Barley	cytosol	88.06	87.41
HORVU2Hr1G089090.1	Barley	cytosol	88.06	87.41
Os04t0515300-02	Rice	cytosol	87.31	87.31
TraesCS6B01G256900.1	Wheat	cytosol	86.57	87.22
EES12512	Sorghum	cytosol	87.31	86.67
Zm00001d006287_P001	Maize	plastid	86.57	86.57
Os02t0622300-00	Rice	nucleus, plasma membrane	86.57	86.57
Zm00001d025857_P001	Maize	cytosol, extracellular, plastid	86.57	85.93
EER97137	Sorghum	cytosol	85.07	85.07
AT2G20450.1	Thale cress	cytosol	85.07	85.07
AT4G27090.1	Thale cress	cytosol	84.33	84.33
Bra010412.1-P	Field mustard	cytosol	83.58	83.58
Bra019070.1-P	Field mustard	cytosol	83.58	83.58
Bra026380.1-P	Field mustard	cytosol	83.58	83.58
Solyc07g042840.1.1	Tomato	cytosol	56.72	83.52
GSMUA_Achr8P19000_001	Banana	mitochondrion	88.06	73.29
CDY46665	Canola	cytosol, mitochondrion	83.58	70.44
CDX97376	Canola	endoplasmic reticulum, mitochondrion	83.58	69.57
GSMUA_Achr11P...	Banana	mitochondrion	88.06	69.41
CDX89280	Canola	golgi, mitochondrion	83.58	67.07
Zm00001d021445_P001	Maize	plastid	84.33	66.08
Bra038852.1-P	Field mustard	cytosol	76.87	66.03
CDY29273	Canola	extracellular	83.58	65.88
CDY12859	Canola	mitochondrion	28.36	65.52
CDX92779	Canola	cytosol	83.58	65.12
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	88.81	59.8
CDY14284	Canola	cytosol	83.58	58.95
CDX82664	Canola	cytosol, plastid	82.09	57.89
CDY39140	Canola	mitochondrion	52.24	45.75
Zm00001d050675_P001	Maize	cytosol	38.06	44.74
Zm00001d047509_P001	Maize	cytosol	37.31	43.86
GSMUA_AchrUn_...	Banana	mitochondrion	84.33	33.93

Protein Annotations

MapMan:17.1.2.1.15	Gene3D:2.30.30.30	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0042273	InterPro:IPR014722	UniProt:K4C3K6
PFAM:PF01929	PANTHER:PTHR11127	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L14e_dom	SUPFAM:SSF50104	EnsemblPlantsGene:Solyc06g008260.2
EnsemblPlants:Solyc06g008260.2.1	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000276653C	:	:	:

Description

No Description!

Coordinates

chr6:+:2134911..2138172

Molecular Weight (calculated)

15403.2 Da

IEP (calculated)

11.038

GRAVY (calculated)

-0.231

Length

134 amino acids

Sequence
(BLAST)

001: MPFKRFVEIG RVALVNYGED YGRLVVIVDV IDQNRALVDA PDMVRSQMNF KRLSLTDVKI DIKRIPKKKT LIAAMEAADV KTKWESSSWG RKLIVQKRRA
101: SLNDFDRFKL MLAKIKRAGV VRQELAKLKK EVAA

Best Arabidopsis Sequence Match ( AT2G20450.1 )
(BLAST)

001: MGFKRFVEIG RVALVNYGED YGKLVVIVDV VDQNRALVDA PDMERIQMNL KRLSLTDIVI DINRVPKKKV LIEAMEKADV KNKWEKSSWG RKLIVQKRRA
101: ALNDFDRFKI MLAKIKRAGI VRQELAKLKR EIAA

Arabidopsis Description

RPL14A60S ribosomal protein L14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.