Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G026880.1 | Barley | mitochondrion, plastid | 99.36 | 99.36 |
| TraesCS3D01G140800.1 | Wheat | golgi, unclear | 99.36 | 99.36 |
| TraesCS3B01G158400.1 | Wheat | mitochondrion, plastid | 98.73 | 98.73 |
| Zm00001d008594_P001 | Maize | mitochondrion | 96.82 | 96.82 |
| EES02512 | Sorghum | mitochondrion | 96.82 | 96.82 |
| Zm00001d039908_P001 | Maize | plastid | 95.54 | 95.54 |
| Os12t0150100-01 | Rice | golgi, plasma membrane, plastid | 90.45 | 94.67 |
| Os11t0151300-01 | Rice | nucleus, plasma membrane, plastid | 90.45 | 92.81 |
| Zm00001d041360_P001 | Maize | cytosol | 36.31 | 86.36 |
| GSMUA_Achr8P18300_001 | Banana | mitochondrion | 84.08 | 86.27 |
| GSMUA_Achr3P01440_001 | Banana | mitochondrion | 84.08 | 86.27 |
| GSMUA_Achr6P09860_001 | Banana | mitochondrion | 85.35 | 84.28 |
| PGSC0003DMT400023405 | Potato | cytosol, mitochondrion | 78.34 | 84.25 |
| Solyc03g044000.1.1 | Tomato | nucleus | 78.34 | 84.25 |
| KRH28357 | Soybean | cytosol, mitochondrion | 77.07 | 82.88 |
| KRH10767 | Soybean | cytosol, mitochondrion | 77.07 | 82.88 |
| KRH77124 | Soybean | mitochondrion | 76.43 | 82.19 |
| Solyc02g064670.1.1 | Tomato | nucleus, unclear | 76.43 | 82.19 |
| PGSC0003DMT400055191 | Potato | cytosol, mitochondrion | 75.8 | 81.51 |
| PGSC0003DMT400085766 | Potato | cytosol, mitochondrion | 75.8 | 81.51 |
| KRH21509 | Soybean | nucleus | 75.8 | 81.51 |
| KRH21559 | Soybean | nucleus | 75.8 | 81.51 |
| Solyc02g092430.1.1 | Tomato | nucleus | 75.16 | 80.82 |
| AT3G49910.1 | Thale cress | cytosol, mitochondrion | 73.89 | 79.45 |
| CDY70622 | Canola | cytosol, mitochondrion | 73.89 | 79.45 |
| CDY02104 | Canola | cytosol, mitochondrion | 73.89 | 79.45 |
| Bra036038.1-P | Field mustard | cytosol, mitochondrion | 73.89 | 79.45 |
| Bra029984.1-P | Field mustard | cytosol, mitochondrion | 73.89 | 79.45 |
| Zm00001d005753_P001 | Maize | mitochondrion | 63.06 | 79.2 |
| Zm00001d040875_P001 | Maize | mitochondrion | 63.06 | 79.2 |
| CDY17740 | Canola | extracellular | 73.25 | 78.77 |
| Bra012916.1-P | Field mustard | cytosol, mitochondrion | 73.25 | 78.77 |
| Zm00001d032087_P001 | Maize | mitochondrion | 62.42 | 78.4 |
| CDY23029 | Canola | cytosol, mitochondrion | 66.24 | 78.2 |
| CDX68557 | Canola | cytosol, mitochondrion | 66.24 | 78.2 |
| AT5G67510.1 | Thale cress | cytosol, plastid | 72.61 | 78.08 |
| CDY30618 | Canola | cytosol, mitochondrion | 65.61 | 77.44 |
| Zm00001d004528_P001 | Maize | plastid | 40.13 | 71.59 |
| GSMUA_Achr10P... | Banana | cytosol | 84.71 | 67.86 |
| KRH17569 | Soybean | mitochondrion | 50.32 | 65.29 |
| Zm00001d049904_P001 | Maize | plastid | 66.88 | 64.42 |
| VIT_01s0010g03220.t01 | Wine grape | cytosol | 22.29 | 63.64 |
| KRH00041 | Soybean | nucleus | 56.69 | 63.12 |
| KRH57594 | Soybean | mitochondrion | 36.94 | 57.43 |
| Os01t0140500-01 | Rice | plasma membrane | 42.68 | 51.94 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 49.68 | 36.97 |
Protein Annotations
| MapMan:17.1.2.1.26 | Gene3D:2.30.30.30 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | InterPro:IPR014722 |
| InterPro:KOW | HAMAP:MF_01326_A | PFAM:PF00467 | PFAM:PF16906 | ScanProsite:PS01108 | PANTHER:PTHR11143 |
| PANTHER:PTHR11143:SF13 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | InterPro:Ribosomal_L26/L24P_euk/arc | SMART:SM00739 | SUPFAM:SSF50104 |
| TIGRFAMs:TIGR01080 | EnsemblPlantsGene:TraesCS3A01G313500 | EnsemblPlants:TraesCS3A01G313500.1 | InterPro:Translation_prot_SH3-like_sf | TIGR:cd06089 | SEG:seg |
Description
No Description!
Coordinates
chr3A:+:552987778..552988251
Molecular Weight (calculated)
17528.3 Da
IEP (calculated)
11.809
GRAVY (calculated)
-0.617
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRNPRVTSS RRKCRKAHFT APSSVRRVLM SAALSSELRH KYNVRSIPIR KDDEVQVVRG TFKGREGKVV QVYRRRWVIH VERITREKVN GSTVNVGIHP
101: SKVIVTKLKL DKDRKALLDR KARGRAADKA KGKFTAEDVA AAAGGATATG ASLQEID
101: SKVIVTKLKL DKDRKALLDR KARGRAADKA KGKFTAEDVA AAAGGATATG ASLQEID
001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD
Arabidopsis Description
RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.