Factsheet for Os12t0150100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	99.33	97.39
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	96.0	91.72
Zm00001d039908_P001	Maize	plastid	95.33	91.08
TraesCS3D01G140800.1	Wheat	golgi, unclear	95.33	91.08
Zm00001d008594_P001	Maize	mitochondrion	95.33	91.08
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	95.33	91.08
TraesCS3A01G313500.1	Wheat	nucleus	94.67	90.45
EES02512	Sorghum	mitochondrion	94.67	90.45
Zm00001d041360_P001	Maize	cytosol	38.67	87.88
GSMUA_Achr3P01440_001	Banana	mitochondrion	86.0	84.31
KRH10767	Soybean	cytosol, mitochondrion	82.0	84.25
Solyc03g044000.1.1	Tomato	nucleus	81.33	83.56
KRH28357	Soybean	cytosol, mitochondrion	81.33	83.56
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	81.33	83.56
KRH77124	Soybean	mitochondrion	80.67	82.88
KRH21559	Soybean	nucleus	80.67	82.88
KRH21509	Soybean	nucleus	80.67	82.88
GSMUA_Achr6P09860_001	Banana	mitochondrion	86.67	81.76
GSMUA_Achr8P18300_001	Banana	mitochondrion	83.33	81.7
Solyc02g064670.1.1	Tomato	nucleus, unclear	79.33	81.51
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	78.67	80.82
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	78.67	80.82
AT3G49910.1	Thale cress	cytosol, mitochondrion	78.0	80.14
Solyc02g092430.1.1	Tomato	nucleus	78.0	80.14
Bra029984.1-P	Field mustard	cytosol, mitochondrion	78.0	80.14
CDY02104	Canola	cytosol, mitochondrion	78.0	80.14
Bra036038.1-P	Field mustard	cytosol, mitochondrion	78.0	80.14
CDY70622	Canola	cytosol, mitochondrion	78.0	80.14
Bra012916.1-P	Field mustard	cytosol, mitochondrion	77.33	79.45
CDY17740	Canola	extracellular	77.33	79.45
Zm00001d005753_P001	Maize	mitochondrion	66.0	79.2
Zm00001d040875_P001	Maize	mitochondrion	66.0	79.2
CDX68557	Canola	cytosol, mitochondrion	70.0	78.95
CDY23029	Canola	cytosol, mitochondrion	70.0	78.95
Zm00001d032087_P001	Maize	mitochondrion	65.33	78.4
CDY30618	Canola	cytosol, mitochondrion	69.33	78.2
AT5G67510.1	Thale cress	cytosol, plastid	74.0	76.03
Zm00001d004528_P001	Maize	plastid	42.0	71.59
GSMUA_Achr10P...	Banana	cytosol	86.67	66.33
KRH17569	Soybean	mitochondrion	52.67	65.29
KRH00041	Soybean	nucleus	60.67	64.54
Zm00001d049904_P001	Maize	plastid	68.0	62.58
VIT_01s0010g03220.t01	Wine grape	cytosol	22.0	60.0
KRH57594	Soybean	mitochondrion	38.67	57.43
Os01t0140500-01	Rice	plasma membrane	46.0	53.49
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	52.0	36.97

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	EntrezGene:4351513	ProteinID:ABA95811.1	EMBL:AK105075	ProteinID:BAF29184.1
ProteinID:BAT15909.1	ProteinID:EAZ19657.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0042273
InterPro:IPR014722	InterPro:KOW	HAMAP:MF_01326_A	EnsemblPlantsGene:Os12g0150100	EnsemblPlants:Os12t0150100-01	PFAM:PF00467
PFAM:PF16906	ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	UniProt:Q2QXN5	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0000681A33	RefSeq:XP_015618223.1	SEG:seg	:	:	:

Description

Similar to 60S ribosomal protein L26A. (Os12t0150100-01)

Coordinates

chr12:-:2460638..2461309

Molecular Weight (calculated)

16931.6 Da

IEP (calculated)

11.620

GRAVY (calculated)

-0.667

Length

150 amino acids

Sequence
(BLAST)

001: MKRNPRVTSS RRKCRKAHFT APSSVRRVLM SAALSTELRH KYNVRSIPIR KDDEVQVVRG SYKGREGKVV QVYRRRWVIH VERITREKVN GSTVNVGIHP
101: SKVVVTKLKL DKDRKAILDR KASGRAADKA KGKFTAEDVA AAGASLQEID

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.