Factsheet for Zm00001d004528_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041360_P001	Maize	cytosol	51.14	68.18
VIT_01s0010g03220.t01	Wine grape	cytosol	37.5	60.0
Zm00001d040875_P001	Maize	mitochondrion	72.73	51.2
Zm00001d032087_P001	Maize	mitochondrion	72.73	51.2
Zm00001d005753_P001	Maize	mitochondrion	70.45	49.6
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	71.59	42.0
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	72.73	40.76
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	72.73	40.76
EES02512	Sorghum	mitochondrion	72.73	40.76
TraesCS3D01G140800.1	Wheat	golgi, unclear	72.73	40.76
Zm00001d008594_P001	Maize	mitochondrion	72.73	40.76
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	70.45	40.52
TraesCS3A01G313500.1	Wheat	nucleus	71.59	40.13
Zm00001d039908_P001	Maize	plastid	71.59	40.13
KRH77124	Soybean	mitochondrion	65.91	39.73
KRH28357	Soybean	cytosol, mitochondrion	65.91	39.73
Solyc02g092430.1.1	Tomato	nucleus	64.77	39.04
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	64.77	39.04
Zm00001d049904_P001	Maize	plastid	71.59	38.65
AT3G49910.1	Thale cress	cytosol, mitochondrion	63.64	38.36
KRH21509	Soybean	nucleus	63.64	38.36
Bra012916.1-P	Field mustard	cytosol, mitochondrion	63.64	38.36
Bra029984.1-P	Field mustard	cytosol, mitochondrion	63.64	38.36
Bra036038.1-P	Field mustard	cytosol, mitochondrion	63.64	38.36
CDY02104	Canola	cytosol, mitochondrion	63.64	38.36
CDY17740	Canola	extracellular	63.64	38.36
CDY70622	Canola	cytosol, mitochondrion	63.64	38.36
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	63.64	38.36
Solyc03g044000.1.1	Tomato	nucleus	63.64	38.36
KRH10767	Soybean	cytosol, mitochondrion	63.64	38.36
Solyc02g064670.1.1	Tomato	nucleus, unclear	62.5	37.67
AT5G67510.1	Thale cress	cytosol, plastid	62.5	37.67
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	62.5	37.67
KRH21559	Soybean	nucleus	62.5	37.67
GSMUA_Achr3P01440_001	Banana	mitochondrion	64.77	37.25
GSMUA_Achr8P18300_001	Banana	mitochondrion	64.77	37.25
GSMUA_Achr6P09860_001	Banana	mitochondrion	67.05	37.11
CDY23029	Canola	cytosol, mitochondrion	52.27	34.59
CDX68557	Canola	cytosol, mitochondrion	52.27	34.59
Os01t0140500-01	Rice	plasma membrane	50.0	34.11
CDY30618	Canola	cytosol, mitochondrion	51.14	33.83
KRH00041	Soybean	nucleus	53.41	33.33
GSMUA_Achr10P...	Banana	cytosol	64.77	29.08
KRH57594	Soybean	mitochondrion	28.41	24.75
KRH17569	Soybean	mitochondrion	32.95	23.97
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	45.45	18.96

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	UniProt:A0A1D6EFX4	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
InterPro:IPR014722	InterPro:KOW	ProteinID:ONM19080.1	PFAM:PF00467	ScanProsite:PS01108	PANTHER:PTHR11143
PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc	SMART:SM00739	SUPFAM:SSF50104
TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00022203AB	EnsemblPlantsGene:Zm00001d004528	EnsemblPlants:Zm00001d004528_P001	EnsemblPlants:Zm00001d004528_T001

Description

60S ribosomal protein L26-1

Coordinates

chr2:+:116725257..116725523

Molecular Weight (calculated)

10232.5 Da

IEP (calculated)

11.803

GRAVY (calculated)

-0.949

Length

88 amino acids

Sequence
(BLAST)

1: MKRNPCITSS RRKCRKAHFT RPRPPSAAFS CPPGCRRSSI PIRKDDEVQV VRGTYKGREG KVVQVYRRRW VIHVERITRE KVNDSVPG

Best Arabidopsis Sequence Match ( AT5G67510.1 )
(BLAST)

001: MKFNPRVSSS RRKNRKAHFT APSSVRRVLM SSPLSKDLRN KHNVRSMPIR KDDEVQVVRG TFKGREGKVM QVYRRKWVIH IERITREKVN GSTVNVGVNA
101: SNVMITKLRL DKDRKSLLER KANGRAAADK EKGTKFSAED VMENVD

Arabidopsis Description

RPL26B60S ribosomal protein L26-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.