CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77124	Soybean	mitochondrion	74.47	71.92
KRH28357	Soybean	cytosol, mitochondrion	73.76	71.23
Zm00001d041360_P001	Maize	cytosol	33.33	71.21
Zm00001d005753_P001	Maize	mitochondrion	60.99	68.8
KRH10767	Soybean	cytosol, mitochondrion	70.92	68.49
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	70.21	67.81
KRH21509	Soybean	nucleus	70.21	67.81
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	70.21	67.81
Zm00001d040875_P001	Maize	mitochondrion	59.57	67.2
KRH21559	Soybean	nucleus	69.5	67.12
Solyc02g064670.1.1	Tomato	nucleus, unclear	68.79	66.44
Zm00001d032087_P001	Maize	mitochondrion	58.87	66.4
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	68.09	65.75
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	68.09	65.75
Solyc03g044000.1.1	Tomato	nucleus	68.09	65.75
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	67.38	65.07
Solyc02g092430.1.1	Tomato	nucleus	67.38	65.07
KRH17569	Soybean	mitochondrion	54.61	63.64
AT3G49910.1	Thale cress	cytosol, mitochondrion	64.54	62.33
Bra036038.1-P	Field mustard	cytosol, mitochondrion	63.12	60.96
Bra029984.1-P	Field mustard	cytosol, mitochondrion	63.12	60.96
CDY02104	Canola	cytosol, mitochondrion	63.12	60.96
CDY17740	Canola	extracellular	63.12	60.96
CDY70622	Canola	cytosol, mitochondrion	63.12	60.96
CDX68557	Canola	cytosol, mitochondrion	57.45	60.9
CDY23029	Canola	cytosol, mitochondrion	57.45	60.9
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	64.54	60.67
Bra012916.1-P	Field mustard	cytosol, mitochondrion	62.41	60.27
CDY30618	Canola	cytosol, mitochondrion	56.74	60.15
AT5G67510.1	Thale cress	cytosol, plastid	61.7	59.59
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	64.54	59.48
GSMUA_Achr8P18300_001	Banana	mitochondrion	63.12	58.17
GSMUA_Achr3P01440_001	Banana	mitochondrion	63.12	58.17
Zm00001d039908_P001	Maize	plastid	63.83	57.32
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	63.83	57.32
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	63.83	57.32
TraesCS3D01G140800.1	Wheat	golgi, unclear	63.83	57.32
EES02512	Sorghum	mitochondrion	63.83	57.32
Zm00001d008594_P001	Maize	mitochondrion	63.83	57.32
TraesCS3A01G313500.1	Wheat	nucleus	63.12	56.69
GSMUA_Achr6P09860_001	Banana	mitochondrion	62.41	55.35
KRH57594	Soybean	mitochondrion	38.3	53.47
Zm00001d004528_P001	Maize	plastid	33.33	53.41
Zm00001d049904_P001	Maize	plastid	60.28	52.15
GSMUA_Achr10P...	Banana	cytosol	62.41	44.9
Os01t0140500-01	Rice	plasma membrane	34.04	37.21
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	40.43	27.01

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	UniProt:A0A0R0FBP0	EMBL:ACUP02011366	EnsemblPlantsGene:GLYMA_18G187700	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0022625	GO:GO:0042273	InterPro:IPR014722	EnsemblPlants:KRH00041	ProteinID:KRH00041
ProteinID:KRH00041.1	PFAM:PF16906	ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc	SUPFAM:SSF50104	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0006EDA1D5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:45169930..45170782

Molecular Weight (calculated)

16054.5 Da

IEP (calculated)

10.348

GRAVY (calculated)

-0.353

Length

141 amino acids

Sequence
(BLAST)

001: MVIDRVSSSH HKSSKAHFTA PSSMRHVLMS APLSTDLRSK YNAWSIPLRK DDDVQVVKGT YKGHEGKVVQ LYFCLWVIHI EHIIREKVNG STVNVGIHPS
101: KVVVTKLRIY KDRKFLLDWK AKGCATTDKE KGTKFAHEDI V

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.