Factsheet for PGSC0003DMT400085766

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g064670.1.1	Tomato	nucleus, unclear	98.63	98.63
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	94.52	94.52
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	93.15	93.15
KRH77124	Soybean	mitochondrion	89.04	89.04
KRH28357	Soybean	cytosol, mitochondrion	88.36	88.36
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	87.67	87.67
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	87.67	87.67
KRH10767	Soybean	cytosol, mitochondrion	86.99	86.99
KRH21559	Soybean	nucleus	85.62	85.62
KRH21509	Soybean	nucleus	85.62	85.62
AT3G49910.1	Thale cress	cytosol, mitochondrion	83.56	83.56
CDY70622	Canola	cytosol, mitochondrion	82.88	82.88
CDY02104	Canola	cytosol, mitochondrion	82.88	82.88
Bra036038.1-P	Field mustard	cytosol, mitochondrion	82.88	82.88
Bra029984.1-P	Field mustard	cytosol, mitochondrion	82.88	82.88
CDY30618	Canola	cytosol, mitochondrion	75.34	82.71
CDY17740	Canola	extracellular	82.19	82.19
Bra012916.1-P	Field mustard	cytosol, mitochondrion	82.19	82.19
CDY23029	Canola	cytosol, mitochondrion	74.66	81.95
CDX68557	Canola	cytosol, mitochondrion	74.66	81.95
GSMUA_Achr3P01440_001	Banana	mitochondrion	82.88	79.08
GSMUA_Achr8P18300_001	Banana	mitochondrion	82.88	79.08
AT5G67510.1	Thale cress	cytosol, plastid	78.77	78.77
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	80.82	78.67
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	81.51	77.78
Zm00001d041360_P001	Maize	cytosol	34.93	77.27
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	82.19	76.43
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	82.19	76.43
TraesCS3D01G140800.1	Wheat	golgi, unclear	82.19	76.43
TraesCS3A01G313500.1	Wheat	nucleus	81.51	75.8
GSMUA_Achr6P09860_001	Banana	mitochondrion	82.19	75.47
Zm00001d008594_P001	Maize	mitochondrion	80.82	75.16
Zm00001d039908_P001	Maize	plastid	80.82	75.16
EES02512	Sorghum	mitochondrion	80.14	74.52
KRH17569	Soybean	mitochondrion	59.59	71.9
Zm00001d005753_P001	Maize	mitochondrion	60.96	71.2
Zm00001d040875_P001	Maize	mitochondrion	59.59	69.6
Zm00001d032087_P001	Maize	mitochondrion	58.9	68.8
KRH00041	Soybean	nucleus	65.75	68.09
Zm00001d004528_P001	Maize	plastid	37.67	62.5
KRH57594	Soybean	mitochondrion	43.15	62.38
GSMUA_Achr10P...	Banana	cytosol	81.51	60.71
Zm00001d049904_P001	Maize	plastid	62.33	55.83
Os01t0140500-01	Rice	plasma membrane	41.1	46.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	52.74	36.49

Protein Annotations

EntrezGene:102588872	MapMan:17.1.2.1.26	Gene3D:2.30.30.30	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
InterPro:IPR014722	InterPro:KOW	UniProt:M1DA81	HAMAP:MF_01326_A	PFAM:PF00467	PFAM:PF16906
EnsemblPlantsGene:PGSC0003DMG400035337	PGSC:PGSC0003DMG400035337	EnsemblPlants:PGSC0003DMT400085766	ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01080
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002949DAD	RefSeq:XP_015159416.1	SEG:seg	:	:

Description

L24 ribosomal protein [Source:PGSC_GENE;Acc:PGSC0003DMG400035337]

Coordinates

chr2:+:22736607..22737047

Molecular Weight (calculated)

16765.4 Da

IEP (calculated)

11.544

GRAVY (calculated)

-0.814

Length

146 amino acids

Sequence
(BLAST)

001: MKYNPRVSSS RRKSRKAHFT APSSARRILM SAPLSSELRV KYNVRSMPVR KDDEVQVVRG TYKGRDGKVV QVYRKKWVIH IERITREKVN GSTVNVGIHP
101: SKVVVTKLRL DKDRRSLLDR KAKGRAAADK DKGTKFTSEE IMQTID

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.