Factsheet for Zm00001d032087_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040875_P001	Maize	mitochondrion	95.2	95.2
Zm00001d005753_P001	Maize	mitochondrion	92.8	92.8
Zm00001d041360_P001	Maize	cytosol	45.6	86.36
Zm00001d004528_P001	Maize	plastid	51.2	72.73
Zm00001d049904_P001	Maize	plastid	87.2	66.87
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	78.4	65.33
Zm00001d039908_P001	Maize	plastid	80.8	64.33
EES02512	Sorghum	mitochondrion	80.0	63.69
VIT_01s0010g03220.t01	Wine grape	cytosol	28.0	63.64
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	77.6	63.4
TraesCS3D01G140800.1	Wheat	golgi, unclear	79.2	63.06
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	79.2	63.06
Zm00001d008594_P001	Maize	mitochondrion	79.2	63.06
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	79.2	63.06
TraesCS3A01G313500.1	Wheat	nucleus	78.4	62.42
KRH28357	Soybean	cytosol, mitochondrion	72.0	61.64
KRH77124	Soybean	mitochondrion	72.0	61.64
KRH10767	Soybean	cytosol, mitochondrion	71.2	60.96
KRH21509	Soybean	nucleus	70.4	60.27
Solyc03g044000.1.1	Tomato	nucleus	69.6	59.59
Solyc02g092430.1.1	Tomato	nucleus	69.6	59.59
KRH21559	Soybean	nucleus	69.6	59.59
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	69.6	59.59
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	69.6	59.59
Solyc02g064670.1.1	Tomato	nucleus, unclear	68.8	58.9
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	68.8	58.9
KRH00041	Soybean	nucleus	66.4	58.87
AT3G49910.1	Thale cress	cytosol, mitochondrion	67.2	57.53
GSMUA_Achr3P01440_001	Banana	mitochondrion	69.6	56.86
GSMUA_Achr8P18300_001	Banana	mitochondrion	69.6	56.86
Bra012916.1-P	Field mustard	cytosol, mitochondrion	66.4	56.85
Bra029984.1-P	Field mustard	cytosol, mitochondrion	66.4	56.85
Bra036038.1-P	Field mustard	cytosol, mitochondrion	66.4	56.85
CDY02104	Canola	cytosol, mitochondrion	66.4	56.85
CDY70622	Canola	cytosol, mitochondrion	66.4	56.85
CDY17740	Canola	extracellular	66.4	56.85
GSMUA_Achr6P09860_001	Banana	mitochondrion	71.2	55.97
AT5G67510.1	Thale cress	cytosol, plastid	64.0	54.79
CDY23029	Canola	cytosol, mitochondrion	57.6	54.14
CDX68557	Canola	cytosol, mitochondrion	57.6	54.14
CDY30618	Canola	cytosol, mitochondrion	56.8	53.38
Os01t0140500-01	Rice	plasma membrane	49.6	48.06
KRH17569	Soybean	mitochondrion	45.6	47.11
GSMUA_Achr10P...	Banana	cytosol	70.4	44.9
KRH57594	Soybean	mitochondrion	29.6	36.63
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	47.2	27.96

Protein Annotations

EntrezGene:103645261	MapMan:17.1.2.1.26	Gene3D:2.30.30.30	UniProt:A0A1D6KNG6	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	InterPro:IPR014722	InterPro:KOW	ProteinID:ONM04358.1	PFAM:PF00467	PFAM:PF16906
PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L26/L24P_euk/arc	SUPFAM:SSF50104	TIGRFAMs:TIGR01080
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002219BC1	EnsemblPlantsGene:Zm00001d032087	EnsemblPlants:Zm00001d032087_P001	EnsemblPlants:Zm00001d032087_T001	SEG:seg

Description

60S ribosomal protein L26-1

Coordinates

chr1:+:212175809..212176186

Molecular Weight (calculated)

14595.0 Da

IEP (calculated)

11.614

GRAVY (calculated)

-0.698

Length

125 amino acids

Sequence
(BLAST)

001: MKRNPRVTSS CRKCRKAHFT SPSSVRRVLM SVGLSTELRH KYSVLSIPIR KDDEVQVVRG TYKGREEKVV QVYRRRWVIH VERITREKVN GSTVNMGIHP
101: SKVIVTKLKL DKDRKVLLDR KAQNN

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.