Factsheet for Solyc02g092430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	97.95	97.95
Solyc02g064670.1.1	Tomato	nucleus, unclear	93.15	93.15
Solyc03g044000.1.1	Tomato	nucleus	92.47	92.47
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	88.36	88.36
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	88.36	88.36
KRH77124	Soybean	mitochondrion	87.67	87.67
KRH28357	Soybean	cytosol, mitochondrion	86.99	86.99
KRH10767	Soybean	cytosol, mitochondrion	85.62	85.62
KRH21559	Soybean	nucleus	84.93	84.93
KRH21509	Soybean	nucleus	84.93	84.93
CDY02104	Canola	cytosol, mitochondrion	84.25	84.25
CDY70622	Canola	cytosol, mitochondrion	83.56	83.56
Bra036038.1-P	Field mustard	cytosol, mitochondrion	83.56	83.56
Bra029984.1-P	Field mustard	cytosol, mitochondrion	83.56	83.56
Bra012916.1-P	Field mustard	cytosol, mitochondrion	83.56	83.56
AT3G49910.1	Thale cress	cytosol, mitochondrion	83.56	83.56
CDY23029	Canola	cytosol, mitochondrion	76.03	83.46
CDY17740	Canola	extracellular	82.88	82.88
CDX68557	Canola	cytosol, mitochondrion	75.34	82.71
CDY30618	Canola	cytosol, mitochondrion	74.66	81.95
GSMUA_Achr3P01440_001	Banana	mitochondrion	84.25	80.39
GSMUA_Achr8P18300_001	Banana	mitochondrion	83.56	79.74
AT5G67510.1	Thale cress	cytosol, plastid	79.45	79.45
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	80.14	78.0
Zm00001d041360_P001	Maize	cytosol	34.93	77.27
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	80.82	77.12
GSMUA_Achr6P09860_001	Banana	mitochondrion	82.88	76.1
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	81.51	75.8
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	81.51	75.8
TraesCS3D01G140800.1	Wheat	golgi, unclear	81.51	75.8
TraesCS3A01G313500.1	Wheat	nucleus	80.82	75.16
Zm00001d008594_P001	Maize	mitochondrion	80.14	74.52
Zm00001d039908_P001	Maize	plastid	80.14	74.52
EES02512	Sorghum	mitochondrion	79.45	73.89
Zm00001d005753_P001	Maize	mitochondrion	60.27	70.4
Zm00001d040875_P001	Maize	mitochondrion	60.27	70.4
Zm00001d032087_P001	Maize	mitochondrion	59.59	69.6
KRH17569	Soybean	mitochondrion	57.53	69.42
KRH00041	Soybean	nucleus	65.07	67.38
Zm00001d004528_P001	Maize	plastid	39.04	64.77
KRH57594	Soybean	mitochondrion	43.15	62.38
GSMUA_Achr10P...	Banana	cytosol	82.19	61.22
Zm00001d049904_P001	Maize	plastid	60.96	54.6
Os01t0140500-01	Rice	plasma membrane	41.1	46.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	53.42	36.97

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0042273
InterPro:IPR014722	UniProt:K4BD39	InterPro:KOW	HAMAP:MF_01326_A	PFAM:PF00467	PFAM:PF16906
ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc
SMART:SM00739	SUPFAM:SSF50104	EnsemblPlantsGene:Solyc02g092430.1	EnsemblPlants:Solyc02g092430.1.1	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002767F54	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:53492514..53492954

Molecular Weight (calculated)

16736.4 Da

IEP (calculated)

11.544

GRAVY (calculated)

-0.782

Length

146 amino acids

Sequence
(BLAST)

001: MKYNPRVSSS RRKSRKAHFT APSSLRRVLM SAPLSSELRA KYSVRSMPVR KDDEVQVVRG TYKGREGKVV QVYRKKWVIH IERITREKVN GSTVNVGIHP
101: SKVVISKLRL DKDRRSLLDR KAKGRAAADK DKGTKFTTEE IMQAID

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.