CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23029	Canola	cytosol, mitochondrion	99.25	99.25
CDY30618	Canola	cytosol, mitochondrion	99.25	99.25
Bra036038.1-P	Field mustard	cytosol, mitochondrion	100.0	91.1
CDY70622	Canola	cytosol, mitochondrion	100.0	91.1
CDY02104	Canola	cytosol, mitochondrion	99.25	90.41
CDY17740	Canola	extracellular	99.25	90.41
AT3G49910.1	Thale cress	cytosol, mitochondrion	97.74	89.04
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	87.97	80.14
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	87.97	80.14
KRH28357	Soybean	cytosol, mitochondrion	85.71	78.08
KRH77124	Soybean	mitochondrion	84.96	77.4
Solyc03g044000.1.1	Tomato	nucleus	84.96	77.4
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	84.96	77.4
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	83.46	76.03
Solyc02g092430.1.1	Tomato	nucleus	82.71	75.34
Solyc02g064670.1.1	Tomato	nucleus, unclear	82.71	75.34
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	81.95	74.66
KRH10767	Soybean	cytosol, mitochondrion	81.2	73.97
KRH21509	Soybean	nucleus	80.45	73.29
KRH21559	Soybean	nucleus	80.45	73.29
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	78.95	70.0
GSMUA_Achr8P18300_001	Banana	mitochondrion	80.45	69.93
GSMUA_Achr3P01440_001	Banana	mitochondrion	79.7	69.28
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	78.95	68.63
GSMUA_Achr6P09860_001	Banana	mitochondrion	81.2	67.92
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	78.95	66.88
Zm00001d008594_P001	Maize	mitochondrion	78.95	66.88
TraesCS3D01G140800.1	Wheat	golgi, unclear	78.95	66.88
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	78.95	66.88
Zm00001d039908_P001	Maize	plastid	78.95	66.88
TraesCS3A01G313500.1	Wheat	nucleus	78.2	66.24
EES02512	Sorghum	mitochondrion	78.2	66.24
KRH57594	Soybean	mitochondrion	46.62	61.39
Zm00001d041360_P001	Maize	cytosol	30.08	60.61
KRH17569	Soybean	mitochondrion	54.89	60.33
Zm00001d005753_P001	Maize	mitochondrion	56.39	60.0
Zm00001d040875_P001	Maize	mitochondrion	55.64	59.2
Zm00001d032087_P001	Maize	mitochondrion	54.14	57.6
KRH00041	Soybean	nucleus	60.9	57.45
GSMUA_Achr10P...	Banana	cytosol	78.95	53.57
Zm00001d004528_P001	Maize	plastid	34.59	52.27
Zm00001d049904_P001	Maize	plastid	57.14	46.63
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	57.89	36.49
Os01t0140500-01	Rice	plasma membrane	34.59	35.66

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	GO:A0A078BWH5	EnsemblPlants:CDX68557	ProteinID:CDX68557	ProteinID:CDX68557.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00126133001	InterPro:IPR014722	InterPro:KOW
PFAM:PF00467	PFAM:PF16906	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L26/L24P_euk/arc
SUPFAM:SSF50104	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EF21E6	SEG:seg	:

Description

BnaC01g26350D

Coordinates

chrLK031788:+:4085948..4086736

Molecular Weight (calculated)

15346.6 Da

IEP (calculated)

11.549

GRAVY (calculated)

-0.915

Length

133 amino acids

Sequence
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNIVRGTYK GREGKVVQVY RRKWVIHIER ITREKVNGTT VNVGVQPSKV VITKLRLDKD
101: RKSLLERKAK GRAAADKDKG TKFTAEDVMQ NVD

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.