CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28357	Soybean	cytosol, mitochondrion	99.32	99.32
KRH10767	Soybean	cytosol, mitochondrion	94.52	94.52
KRH21509	Soybean	nucleus	93.15	93.15
KRH21559	Soybean	nucleus	93.15	93.15
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	91.1	91.1
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	91.1	91.1
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	90.41	90.41
Solyc03g044000.1.1	Tomato	nucleus	90.41	90.41
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	89.04	89.04
Solyc02g064670.1.1	Tomato	nucleus, unclear	89.04	89.04
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	88.36	88.36
Solyc02g092430.1.1	Tomato	nucleus	87.67	87.67
AT3G49910.1	Thale cress	cytosol, mitochondrion	86.3	86.3
CDY23029	Canola	cytosol, mitochondrion	77.4	84.96
CDX68557	Canola	cytosol, mitochondrion	77.4	84.96
CDY70622	Canola	cytosol, mitochondrion	84.93	84.93
CDY02104	Canola	cytosol, mitochondrion	84.93	84.93
Bra036038.1-P	Field mustard	cytosol, mitochondrion	84.93	84.93
Bra029984.1-P	Field mustard	cytosol, mitochondrion	84.93	84.93
AT5G67510.1	Thale cress	cytosol, plastid	84.25	84.25
CDY17740	Canola	extracellular	84.25	84.25
Bra012916.1-P	Field mustard	cytosol, mitochondrion	84.25	84.25
CDY30618	Canola	cytosol, mitochondrion	76.71	84.21
KRH17569	Soybean	mitochondrion	68.49	82.64
Zm00001d041360_P001	Maize	cytosol	36.99	81.82
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	82.88	80.67
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	83.56	79.74
GSMUA_Achr3P01440_001	Banana	mitochondrion	83.56	79.74
GSMUA_Achr8P18300_001	Banana	mitochondrion	83.56	79.74
Zm00001d039908_P001	Maize	plastid	82.88	77.07
Zm00001d008594_P001	Maize	mitochondrion	82.88	77.07
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	82.88	77.07
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	82.88	77.07
TraesCS3D01G140800.1	Wheat	golgi, unclear	82.88	77.07
EES02512	Sorghum	mitochondrion	82.19	76.43
TraesCS3A01G313500.1	Wheat	nucleus	82.19	76.43
GSMUA_Achr6P09860_001	Banana	mitochondrion	82.88	76.1
KRH00041	Soybean	nucleus	71.92	74.47
Zm00001d005753_P001	Maize	mitochondrion	63.7	74.4
KRH57594	Soybean	mitochondrion	51.37	74.26
Zm00001d040875_P001	Maize	mitochondrion	62.33	72.8
Zm00001d032087_P001	Maize	mitochondrion	61.64	72.0
Zm00001d004528_P001	Maize	plastid	39.73	65.91
GSMUA_Achr10P...	Banana	cytosol	82.19	61.22
Zm00001d049904_P001	Maize	plastid	66.44	59.51
Os01t0140500-01	Rice	plasma membrane	41.1	46.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	53.42	36.97

Protein Annotations

EntrezGene:100819391	MapMan:17.1.2.1.26	Gene3D:2.30.30.30	EMBL:ACUP02000658	EnsemblPlantsGene:GLYMA_01G193800	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0022625	GO:GO:0042273	UniProt:I1J9E4	InterPro:IPR014722	InterPro:KOW
EnsemblPlants:KRH77124	ProteinID:KRH77124	ProteinID:KRH77124.1	HAMAP:MF_01326_A	PFAM:PF00467	PFAM:PF16906
ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc
SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0000E6486A	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:52833668..52834580

Molecular Weight (calculated)

16731.4 Da

IEP (calculated)

11.646

GRAVY (calculated)

-0.791

Length

146 amino acids

Sequence
(BLAST)

001: MKFNPRVSSS RRKSRKAHFT APSSVRRVLM SAPLSTDLRS KYNVRSIPVR KDDEVQVVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GSTVNVGIHP
101: SKVVVTKLRM DKDRKSLLDR KAKGRAAADK EKGTKFAPED IMQTVD

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.