Factsheet for Bra012916.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02104	Canola	cytosol, mitochondrion	99.32	99.32
CDY23029	Canola	cytosol, mitochondrion	90.41	99.25
Bra029984.1-P	Field mustard	cytosol, mitochondrion	98.63	98.63
Bra036038.1-P	Field mustard	cytosol, mitochondrion	98.63	98.63
AT3G49910.1	Thale cress	cytosol, mitochondrion	96.58	96.58
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	87.67	87.67
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	87.67	87.67
Solyc03g044000.1.1	Tomato	nucleus	84.93	84.93
KRH28357	Soybean	cytosol, mitochondrion	84.93	84.93
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	84.25	84.25
KRH77124	Soybean	mitochondrion	84.25	84.25
Solyc02g092430.1.1	Tomato	nucleus	83.56	83.56
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	83.56	83.56
Solyc02g064670.1.1	Tomato	nucleus, unclear	82.88	82.88
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	82.19	82.19
KRH10767	Soybean	cytosol, mitochondrion	80.14	80.14
KRH21509	Soybean	nucleus	79.45	79.45
KRH21559	Soybean	nucleus	79.45	79.45
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	79.45	77.33
Zm00001d041360_P001	Maize	cytosol	34.93	77.27
GSMUA_Achr8P18300_001	Banana	mitochondrion	80.14	76.47
GSMUA_Achr3P01440_001	Banana	mitochondrion	79.45	75.82
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	78.77	75.16
GSMUA_Achr6P09860_001	Banana	mitochondrion	80.82	74.21
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	79.45	73.89
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	79.45	73.89
TraesCS3D01G140800.1	Wheat	golgi, unclear	79.45	73.89
Zm00001d008594_P001	Maize	mitochondrion	79.45	73.89
Zm00001d039908_P001	Maize	plastid	79.45	73.89
TraesCS3A01G313500.1	Wheat	nucleus	78.77	73.25
EES02512	Sorghum	mitochondrion	78.77	73.25
Zm00001d005753_P001	Maize	mitochondrion	58.9	68.8
Zm00001d040875_P001	Maize	mitochondrion	58.22	68.0
Zm00001d032087_P001	Maize	mitochondrion	56.85	66.4
KRH17569	Soybean	mitochondrion	54.79	66.12
Zm00001d004528_P001	Maize	plastid	38.36	63.64
KRH00041	Soybean	nucleus	60.27	62.41
KRH57594	Soybean	mitochondrion	43.15	62.38
GSMUA_Achr10P...	Banana	cytosol	78.77	58.67
Zm00001d049904_P001	Maize	plastid	59.59	53.37
Os01t0140500-01	Rice	plasma membrane	39.73	44.96
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	52.74	36.49

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	EnsemblPlantsGene:Bra012916	EnsemblPlants:Bra012916.1	EnsemblPlants:Bra012916.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	InterPro:IPR014722	InterPro:KOW	UniProt:M4D8V6	PFAM:PF00467
PFAM:PF16906	ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS
InterPro:Ribosomal_L26/L24P_euk/arc	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00025405F0
SEG:seg	:	:	:	:	:

Description

AT3G49910 (E=2e-066) | 60S ribosomal protein L26 (RPL26A)

Coordinates

chrA03:+:21527838..21528278

Molecular Weight (calculated)

16845.4 Da

IEP (calculated)

11.319

GRAVY (calculated)

-0.894

Length

146 amino acids

Sequence
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRA KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGVQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADE DKGTKFTAED VMQNVD

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.