Factsheet for Solyc03g044000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	99.32	99.32
Solyc02g092430.1.1	Tomato	nucleus	92.47	92.47
Solyc02g064670.1.1	Tomato	nucleus, unclear	91.78	91.78
KRH28357	Soybean	cytosol, mitochondrion	91.1	91.1
KRH77124	Soybean	mitochondrion	90.41	90.41
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	89.73	89.73
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	89.73	89.73
KRH10767	Soybean	cytosol, mitochondrion	89.04	89.04
KRH21509	Soybean	nucleus	87.67	87.67
KRH21559	Soybean	nucleus	87.67	87.67
CDY23029	Canola	cytosol, mitochondrion	78.08	85.71
CDY02104	Canola	cytosol, mitochondrion	85.62	85.62
CDX68557	Canola	cytosol, mitochondrion	77.4	84.96
CDY70622	Canola	cytosol, mitochondrion	84.93	84.93
Bra036038.1-P	Field mustard	cytosol, mitochondrion	84.93	84.93
Bra029984.1-P	Field mustard	cytosol, mitochondrion	84.93	84.93
Bra012916.1-P	Field mustard	cytosol, mitochondrion	84.93	84.93
CDY17740	Canola	extracellular	84.25	84.25
AT3G49910.1	Thale cress	cytosol, mitochondrion	84.25	84.25
CDY30618	Canola	cytosol, mitochondrion	76.71	84.21
AT5G67510.1	Thale cress	cytosol, plastid	83.56	83.56
GSMUA_Achr8P18300_001	Banana	mitochondrion	86.3	82.35
GSMUA_Achr3P01440_001	Banana	mitochondrion	86.3	82.35
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	83.56	81.33
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	84.25	80.39
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	84.93	78.98
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	84.93	78.98
TraesCS3D01G140800.1	Wheat	golgi, unclear	84.93	78.98
Zm00001d041360_P001	Maize	cytosol	35.62	78.79
GSMUA_Achr6P09860_001	Banana	mitochondrion	85.62	78.62
TraesCS3A01G313500.1	Wheat	nucleus	84.25	78.34
Zm00001d008594_P001	Maize	mitochondrion	83.56	77.71
Zm00001d039908_P001	Maize	plastid	83.56	77.71
EES02512	Sorghum	mitochondrion	82.88	77.07
KRH17569	Soybean	mitochondrion	60.96	73.55
Zm00001d005753_P001	Maize	mitochondrion	61.64	72.0
Zm00001d040875_P001	Maize	mitochondrion	60.27	70.4
Zm00001d032087_P001	Maize	mitochondrion	59.59	69.6
KRH00041	Soybean	nucleus	65.75	68.09
KRH57594	Soybean	mitochondrion	45.21	65.35
Zm00001d004528_P001	Maize	plastid	38.36	63.64
GSMUA_Achr10P...	Banana	cytosol	84.93	63.27
Zm00001d049904_P001	Maize	plastid	63.01	56.44
Os01t0140500-01	Rice	plasma membrane	43.15	48.84
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	54.11	37.44

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0042273
InterPro:IPR014722	UniProt:K4BG20	InterPro:KOW	HAMAP:MF_01326_A	PFAM:PF00467	PFAM:PF16906
ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc
SMART:SM00739	SUPFAM:SSF50104	EnsemblPlantsGene:Solyc03g044000.1	EnsemblPlants:Solyc03g044000.1.1	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002768168	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:7798282..7798722

Molecular Weight (calculated)

16698.4 Da

IEP (calculated)

11.467

GRAVY (calculated)

-0.797

Length

146 amino acids

Sequence
(BLAST)

001: MKYNPRVSSS RRKSRKAHFT APSSVRRVLM SAPLSSELRA KYNVRSIPVR KDDEVQVVRG TYKGREGKVM QVYRKKWVIH IERITREKVN GSTVNVGINP
101: SKVVVTKLRL DKDRKSLLDR KAKGRAAADK DKGTKFTAEE VMQTID

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.