CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029984.1-P	Field mustard	cytosol, mitochondrion	99.32	99.32
CDY70622	Canola	cytosol, mitochondrion	99.32	99.32
CDX68557	Canola	cytosol, mitochondrion	90.41	99.25
CDY02104	Canola	cytosol, mitochondrion	98.63	98.63
CDY23029	Canola	cytosol, mitochondrion	89.73	98.5
CDY30618	Canola	cytosol, mitochondrion	89.73	98.5
AT3G49910.1	Thale cress	cytosol, mitochondrion	97.26	97.26
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	87.67	87.67
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	87.67	87.67
KRH28357	Soybean	cytosol, mitochondrion	84.93	84.93
KRH77124	Soybean	mitochondrion	84.25	84.25
Solyc03g044000.1.1	Tomato	nucleus	84.25	84.25
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	84.25	84.25
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	83.56	83.56
Solyc02g092430.1.1	Tomato	nucleus	82.88	82.88
Solyc02g064670.1.1	Tomato	nucleus, unclear	82.88	82.88
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	82.19	82.19
KRH10767	Soybean	cytosol, mitochondrion	80.14	80.14
KRH21509	Soybean	nucleus	79.45	79.45
KRH21559	Soybean	nucleus	79.45	79.45
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	79.45	77.33
Zm00001d041360_P001	Maize	cytosol	34.93	77.27
GSMUA_Achr8P18300_001	Banana	mitochondrion	80.14	76.47
GSMUA_Achr3P01440_001	Banana	mitochondrion	79.45	75.82
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	78.77	75.16
GSMUA_Achr6P09860_001	Banana	mitochondrion	80.82	74.21
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	79.45	73.89
TraesCS3D01G140800.1	Wheat	golgi, unclear	79.45	73.89
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	79.45	73.89
Zm00001d008594_P001	Maize	mitochondrion	79.45	73.89
Zm00001d039908_P001	Maize	plastid	79.45	73.89
TraesCS3A01G313500.1	Wheat	nucleus	78.77	73.25
EES02512	Sorghum	mitochondrion	78.77	73.25
Zm00001d005753_P001	Maize	mitochondrion	58.9	68.8
Zm00001d040875_P001	Maize	mitochondrion	58.22	68.0
Zm00001d032087_P001	Maize	mitochondrion	56.85	66.4
KRH17569	Soybean	mitochondrion	54.79	66.12
Zm00001d004528_P001	Maize	plastid	38.36	63.64
KRH00041	Soybean	nucleus	60.96	63.12
KRH57594	Soybean	mitochondrion	43.15	62.38
GSMUA_Achr10P...	Banana	cytosol	78.77	58.67
Zm00001d049904_P001	Maize	plastid	59.59	53.37
Os01t0140500-01	Rice	plasma membrane	39.73	44.96
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	52.05	36.02

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	GO:A0A078FT81	UniProt:A0A078FT81	EnsemblPlants:CDY17740	ProteinID:CDY17740
ProteinID:CDY17740.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00001968001	InterPro:IPR014722
InterPro:KOW	PFAM:PF00467	PFAM:PF16906	ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01080
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EED38B	SEG:seg	:	:	:

Description

BnaC08g21480DBnaC08g21480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT81]

Coordinates

chrLK032077:+:80505..81260

Molecular Weight (calculated)

16873.5 Da

IEP (calculated)

11.369

GRAVY (calculated)

-0.929

Length

146 amino acids

Sequence
(BLAST)

001: MKYNPKVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGVQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK DKGTKFTAED VMQNVD

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.