Factsheet for VIT_07s0129g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	100.0	100.0
KRH77124	Soybean	mitochondrion	91.1	91.1
KRH28357	Soybean	cytosol, mitochondrion	90.41	90.41
Solyc03g044000.1.1	Tomato	nucleus	89.73	89.73
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	89.73	89.73
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	89.04	89.04
CDY70622	Canola	cytosol, mitochondrion	88.36	88.36
Solyc02g064670.1.1	Tomato	nucleus, unclear	88.36	88.36
Solyc02g092430.1.1	Tomato	nucleus	88.36	88.36
CDY02104	Canola	cytosol, mitochondrion	88.36	88.36
Bra036038.1-P	Field mustard	cytosol, mitochondrion	88.36	88.36
Bra029984.1-P	Field mustard	cytosol, mitochondrion	88.36	88.36
CDY23029	Canola	cytosol, mitochondrion	80.14	87.97
CDX68557	Canola	cytosol, mitochondrion	80.14	87.97
AT3G49910.1	Thale cress	cytosol, mitochondrion	87.67	87.67
CDY17740	Canola	extracellular	87.67	87.67
Bra012916.1-P	Field mustard	cytosol, mitochondrion	87.67	87.67
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	87.67	87.67
CDY30618	Canola	cytosol, mitochondrion	79.45	87.22
KRH10767	Soybean	cytosol, mitochondrion	86.99	86.99
AT5G67510.1	Thale cress	cytosol, plastid	86.3	86.3
KRH21559	Soybean	nucleus	86.3	86.3
KRH21509	Soybean	nucleus	86.3	86.3
GSMUA_Achr8P18300_001	Banana	mitochondrion	86.99	83.01
GSMUA_Achr3P01440_001	Banana	mitochondrion	86.99	83.01
GSMUA_Achr6P09860_001	Banana	mitochondrion	84.93	77.99
VIT_14s0006g02470.t01	Wine grape	cytosol	89.04	75.58
KRH17569	Soybean	mitochondrion	60.27	72.73
KRH00041	Soybean	nucleus	67.81	70.21
KRH57594	Soybean	mitochondrion	47.95	69.31
VIT_01s0010g03220.t01	Wine grape	cytosol	24.66	65.45
GSMUA_Achr10P...	Banana	cytosol	85.62	63.78
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	56.85	39.34

Protein Annotations

EntrezGene:100242242	wikigene:100242242	EntrezGene:100855039	wikigene:100855039	MapMan:17.1.2.1.26	Gene3D:2.30.30.30
UniProt:A5AQ64	EMBL:AM431974	ProteinID:CAN75906	ProteinID:CAN75906.1	ProteinID:CBI33687	ProteinID:CBI33687.3
ProteinID:CBI33693	ProteinID:CBI33693.3	EMBL:FN596246	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625
GO:GO:0042273	InterPro:IPR014722	InterPro:KOW	EntrezGene:LOC100242242	wikigene:LOC100242242	EntrezGene:LOC100855039
wikigene:LOC100855039	HAMAP:MF_01326_A	PFAM:PF00467	PFAM:PF16906	ScanProsite:PS01108	PANTHER:PTHR11143
PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc	SMART:SM00739	SUPFAM:SSF50104
TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000151F412	ArrayExpress:VIT_07s0129g00090	EnsemblPlantsGene:VIT_07s0129g00090	EnsemblPlants:VIT_07s0129g00090.t01
RefSeq:XP_002284455.1	RefSeq:XP_003632488.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:15369750..15370242

Molecular Weight (calculated)

16670.3 Da

IEP (calculated)

11.646

GRAVY (calculated)

-0.807

Length

146 amino acids

Sequence
(BLAST)

001: MKYNPRVSSS RRKSRKAHFT APSSVRRVLM SAPLSTDLRS KYNARSMPIR KDDEVQVVRG TFKGREGKVV QVYRRKWVIH VERITREKVN GSTVNVGINP
101: SKVVITKLRL DKDRKSLLDR KAKGRAAADK DKGTKFTAED IMQSVD

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.