Factsheet for VIT_14s0006g02470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18300_001	Banana	mitochondrion	79.65	89.54
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	75.58	89.04
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	75.58	89.04
GSMUA_Achr3P01440_001	Banana	mitochondrion	77.91	87.58
GSMUA_Achr6P09860_001	Banana	mitochondrion	79.65	86.16
GSMUA_Achr10P...	Banana	cytosol	79.07	69.39
VIT_01s0010g03220.t01	Wine grape	cytosol	20.35	63.64
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	47.09	38.39

Protein Annotations

EntrezGene:100267018	wikigene:100267018	MapMan:17.1.2.1.26	Gene3D:2.30.30.30	EMBL:AM423495	EMBL:AM461083
ProteinID:CAN72392	ProteinID:CAN72392.1	ProteinID:CAN73296	ProteinID:CAN73296.1	ProteinID:CCB57691	ProteinID:CCB57691.1
UniProt:F6HSQ0	EMBL:FN596245	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0042273
InterPro:IPR014722	InterPro:KOW	EntrezGene:LOC100267018	wikigene:LOC100267018	PFAM:PF00467	PFAM:PF16906
ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc
SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00021085B5	ArrayExpress:VIT_14s0006g02470
EnsemblPlantsGene:VIT_14s0006g02470	EnsemblPlants:VIT_14s0006g02470.t01	unigene:Vvi.6688	RefSeq:XP_002284266	RefSeq:XP_002284266.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:20081132..20081976

Molecular Weight (calculated)

19469.6 Da

IEP (calculated)

11.408

GRAVY (calculated)

-0.855

Length

172 amino acids

Sequence
(BLAST)

001: MARPFSSNRE KTNPNPKEGE KMKYNPRVTS SRRKCRKAHF TAPSSVRRVL MSAPLSTDLR NKYNVRSVPI RKDDEVQVVR GTFKGREGKV VQVYRRKWVI
101: HIERITREKV NGSTVNVGIN PSKVVINKLK LDKDRKSLLD RKAKGRAADK AKGKFTAEDV AAAAAPSLQE ID

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.