Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041360_P001 | Maize | cytosol | 54.55 | 45.45 |
| Zm00001d004528_P001 | Maize | plastid | 60.0 | 37.5 |
| Zm00001d040875_P001 | Maize | mitochondrion | 65.45 | 28.8 |
| Zm00001d032087_P001 | Maize | mitochondrion | 63.64 | 28.0 |
| Zm00001d005753_P001 | Maize | mitochondrion | 63.64 | 28.0 |
| VIT_07s0129g00090.t01 | Wine grape | cytosol, mitochondrion | 65.45 | 24.66 |
| VIT_07s0129g00160.t01 | Wine grape | cytosol, mitochondrion | 65.45 | 24.66 |
| TraesCS3A01G313500.1 | Wheat | nucleus | 63.64 | 22.29 |
| Os12t0150100-01 | Rice | golgi, plasma membrane, plastid | 60.0 | 22.0 |
| HORVU3Hr1G026880.1 | Barley | mitochondrion, plastid | 61.82 | 21.66 |
| Zm00001d039908_P001 | Maize | plastid | 61.82 | 21.66 |
| Zm00001d008594_P001 | Maize | mitochondrion | 61.82 | 21.66 |
| TraesCS3D01G140800.1 | Wheat | golgi, unclear | 61.82 | 21.66 |
| TraesCS3B01G158400.1 | Wheat | mitochondrion, plastid | 61.82 | 21.66 |
| EES02512 | Sorghum | mitochondrion | 61.82 | 21.66 |
| Zm00001d049904_P001 | Maize | plastid | 63.64 | 21.47 |
| Os11t0151300-01 | Rice | nucleus, plasma membrane, plastid | 58.18 | 20.91 |
| VIT_14s0006g02470.t01 | Wine grape | cytosol | 63.64 | 20.35 |
| Os01t0140500-01 | Rice | plasma membrane | 30.91 | 13.18 |
Protein Annotations
| Gene3D:2.30.30.30 | MapMan:35.2 | ProteinID:CCB51277 | ProteinID:CCB51277.1 | UniProt:F6HG84 | EMBL:FN595754 |
| GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015934 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0042273 | InterPro:IPR014722 | InterPro:KOW |
| PFAM:PF00467 | ScanProsite:PS01108 | PANTHER:PTHR11143 | PANTHER:PTHR11143:SF13 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS |
| InterPro:Ribosomal_L26/L24P_euk/arc | SMART:SM00739 | SUPFAM:SSF50104 | TIGRFAMs:TIGR01080 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000210A424 |
| ArrayExpress:VIT_01s0010g03220 | EnsemblPlantsGene:VIT_01s0010g03220 | EnsemblPlants:VIT_01s0010g03220.t01 | RefSeq:XP_002263032 | RefSeq:XP_002263032.1 | : |
Description
No Description!
Coordinates
chr1:-:20463680..20463936
Molecular Weight (calculated)
6381.9 Da
IEP (calculated)
11.066
GRAVY (calculated)
-0.567
Length
55 amino acids
Sequence
(BLAST)
(BLAST)
1: MPIRKDDEVQ VVRGTFKGRE GKVVQVYCQK RVIHVKRISH EKIPIGFPHS RSTPL
001: MKFNPRVSSS RRKNRKAHFT APSSVRRVLM SSPLSKDLRN KHNVRSMPIR KDDEVQVVRG TFKGREGKVM QVYRRKWVIH IERITREKVN GSTVNVGVNA
101: SNVMITKLRL DKDRKSLLER KANGRAAADK EKGTKFSAED VMENVD
101: SNVMITKLRL DKDRKSLLER KANGRAAADK EKGTKFSAED VMENVD
Arabidopsis Description
RPL26B60S ribosomal protein L26-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX2]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.