Factsheet for Os01t0140500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041360_P001	Maize	cytosol	26.36	51.52
Zm00001d004528_P001	Maize	plastid	34.11	50.0
Zm00001d040875_P001	Maize	mitochondrion	48.06	49.6
Zm00001d032087_P001	Maize	mitochondrion	48.06	49.6
Zm00001d005753_P001	Maize	mitochondrion	47.29	48.8
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	53.49	46.0
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	52.71	44.44
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	52.71	43.31
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	52.71	43.31
TraesCS3D01G140800.1	Wheat	golgi, unclear	52.71	43.31
Solyc03g044000.1.1	Tomato	nucleus	48.84	43.15
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	48.84	43.15
TraesCS3A01G313500.1	Wheat	nucleus	51.94	42.68
EES02512	Sorghum	mitochondrion	51.16	42.04
Zm00001d008594_P001	Maize	mitochondrion	51.16	42.04
KRH28357	Soybean	cytosol, mitochondrion	47.29	41.78
Zm00001d039908_P001	Maize	plastid	50.39	41.4
Zm00001d049904_P001	Maize	plastid	51.94	41.1
KRH10767	Soybean	cytosol, mitochondrion	46.51	41.1
Solyc02g092430.1.1	Tomato	nucleus	46.51	41.1
Solyc02g064670.1.1	Tomato	nucleus, unclear	46.51	41.1
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	46.51	41.1
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	46.51	41.1
KRH77124	Soybean	mitochondrion	46.51	41.1
KRH21509	Soybean	nucleus	46.51	41.1
KRH21559	Soybean	nucleus	45.74	40.41
AT3G49910.1	Thale cress	cytosol, mitochondrion	44.96	39.73
Bra012916.1-P	Field mustard	cytosol, mitochondrion	44.96	39.73
Bra029984.1-P	Field mustard	cytosol, mitochondrion	44.96	39.73
Bra036038.1-P	Field mustard	cytosol, mitochondrion	44.96	39.73
CDY02104	Canola	cytosol, mitochondrion	44.96	39.73
CDY70622	Canola	cytosol, mitochondrion	44.96	39.73
CDY17740	Canola	extracellular	44.96	39.73
GSMUA_Achr3P01440_001	Banana	mitochondrion	46.51	39.22
AT5G67510.1	Thale cress	cytosol, plastid	44.19	39.04
GSMUA_Achr8P18300_001	Banana	mitochondrion	45.74	38.56
GSMUA_Achr6P09860_001	Banana	mitochondrion	46.51	37.74
CDY23029	Canola	cytosol, mitochondrion	35.66	34.59
CDY30618	Canola	cytosol, mitochondrion	35.66	34.59
CDX68557	Canola	cytosol, mitochondrion	35.66	34.59
KRH00041	Soybean	nucleus	37.21	34.04
KRH17569	Soybean	mitochondrion	30.23	32.23
VIT_01s0010g03220.t01	Wine grape	cytosol	13.18	30.91
GSMUA_Achr10P...	Banana	cytosol	45.74	30.1
KRH57594	Soybean	mitochondrion	22.48	28.71
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	26.36	16.11

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	ProteinID:BAD61308.1	ProteinID:BAF03895.1	ProteinID:BAS70313.1	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0022625	GO:GO:0042273	InterPro:IPR014722	EnsemblPlantsGene:Os01g0140500	EnsemblPlants:Os01t0140500-01
PFAM:PF16906	PANTHER:PTHR11143	UniProt:Q5ZDH6	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L26/L24P_euk/arc	SUPFAM:SSF50104
TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0000450518	SEG:seg	:	:

Description

Similar to 60S ribosomal protein L26B. (Os01t0140500-01)

Coordinates

chr1:+:2137800..2138539

Molecular Weight (calculated)

14544.8 Da

IEP (calculated)

11.242

GRAVY (calculated)

-0.309

Length

129 amino acids

Sequence
(BLAST)

001: MKRNPRVTSS RRKCRKAHFT APSSVRRVLM SAALSSELRH KYNVRSIPIR KDDEVQVVRG SYKGVPPPPA PRSRRSIRLV GRICWCSYCS PPPYLAFVSL
101: STASARSSCY LNTACCFIVE NVSMRVLDP

Best Arabidopsis Sequence Match ( AT5G67510.1 )
(BLAST)

001: MKFNPRVSSS RRKNRKAHFT APSSVRRVLM SSPLSKDLRN KHNVRSMPIR KDDEVQVVRG TFKGREGKVM QVYRRKWVIH IERITREKVN GSTVNVGVNA
101: SNVMITKLRL DKDRKSLLER KANGRAAADK EKGTKFSAED VMENVD

Arabidopsis Description

RPL26B60S ribosomal protein L26-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.