Factsheet for Zm00001d039908_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008594_P001	Maize	mitochondrion	97.45	97.45
EES02512	Sorghum	mitochondrion	97.45	97.45
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	96.18	96.18
TraesCS3D01G140800.1	Wheat	golgi, unclear	96.18	96.18
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	95.54	95.54
TraesCS3A01G313500.1	Wheat	nucleus	95.54	95.54
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	91.08	95.33
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	90.45	92.81
Zm00001d041360_P001	Maize	cytosol	38.22	90.91
GSMUA_Achr6P09860_001	Banana	mitochondrion	87.26	86.16
GSMUA_Achr3P01440_001	Banana	mitochondrion	82.8	84.97
GSMUA_Achr8P18300_001	Banana	mitochondrion	82.17	84.31
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	77.71	83.56
Solyc03g044000.1.1	Tomato	nucleus	77.71	83.56
KRH28357	Soybean	cytosol, mitochondrion	77.71	83.56
KRH77124	Soybean	mitochondrion	77.07	82.88
KRH10767	Soybean	cytosol, mitochondrion	77.07	82.88
Zm00001d040875_P001	Maize	mitochondrion	64.97	81.6
Zm00001d005753_P001	Maize	mitochondrion	64.97	81.6
Solyc02g064670.1.1	Tomato	nucleus, unclear	75.8	81.51
KRH21509	Soybean	nucleus	75.8	81.51
KRH21559	Soybean	nucleus	75.8	81.51
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	75.16	80.82
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	75.16	80.82
Zm00001d032087_P001	Maize	mitochondrion	64.33	80.8
CDY70622	Canola	cytosol, mitochondrion	74.52	80.14
CDY02104	Canola	cytosol, mitochondrion	74.52	80.14
Bra036038.1-P	Field mustard	cytosol, mitochondrion	74.52	80.14
Solyc02g092430.1.1	Tomato	nucleus	74.52	80.14
Bra029984.1-P	Field mustard	cytosol, mitochondrion	74.52	80.14
AT3G49910.1	Thale cress	cytosol, mitochondrion	74.52	80.14
CDY17740	Canola	extracellular	73.89	79.45
Bra012916.1-P	Field mustard	cytosol, mitochondrion	73.89	79.45
CDY23029	Canola	cytosol, mitochondrion	66.88	78.95
CDX68557	Canola	cytosol, mitochondrion	66.88	78.95
CDY30618	Canola	cytosol, mitochondrion	66.24	78.2
AT5G67510.1	Thale cress	cytosol, plastid	71.34	76.71
Zm00001d004528_P001	Maize	plastid	40.13	71.59
GSMUA_Achr10P...	Banana	cytosol	85.35	68.37
Zm00001d049904_P001	Maize	plastid	67.52	65.03
KRH17569	Soybean	mitochondrion	49.68	64.46
KRH00041	Soybean	nucleus	57.32	63.83
VIT_01s0010g03220.t01	Wine grape	cytosol	21.66	61.82
KRH57594	Soybean	mitochondrion	36.31	56.44
Os01t0140500-01	Rice	plasma membrane	41.4	50.39
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	49.68	36.97

Protein Annotations

MapMan:17.1.2.1.26	Gene3D:2.30.30.30	EntrezGene:542610	UniProt:A0A1D6MLR1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	InterPro:IPR014722	InterPro:KOW	HAMAP:MF_01326_A	ProteinID:ONM30149.1	PFAM:PF00467
PFAM:PF16906	ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS
InterPro:Ribosomal_L26/L24P_euk/arc	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000221282F
EnsemblPlantsGene:Zm00001d039908	EnsemblPlants:Zm00001d039908_P001	EnsemblPlants:Zm00001d039908_T001	SEG:seg	:	:

Description

Ribosomal protein L26

Coordinates

chr3:-:19082590..19083063

Molecular Weight (calculated)

17500.3 Da

IEP (calculated)

11.710

GRAVY (calculated)

-0.640

Length

157 amino acids

Sequence
(BLAST)

001: MKRNPRVTSS RRKCRKAHFT APSSVRRVLM SAGLSTELRH KYNVRSIPIR KDDEVQVVRG TYKGREGKVV QVYRRRWVIH VERITREKVN GSTVNVGIHP
101: SKVIVTKLKL DKDRKALLDR KARGRAADKA KGKFTADDVA AAAAGGAATG ASLQEID

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.