CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77124	Soybean	mitochondrion	99.32	99.32
KRH10767	Soybean	cytosol, mitochondrion	93.84	93.84
KRH21559	Soybean	nucleus	92.47	92.47
KRH21509	Soybean	nucleus	92.47	92.47
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	91.1	91.1
Solyc03g044000.1.1	Tomato	nucleus	91.1	91.1
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	90.41	90.41
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	90.41	90.41
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	88.36	88.36
Solyc02g064670.1.1	Tomato	nucleus, unclear	88.36	88.36
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	87.67	87.67
AT3G49910.1	Thale cress	cytosol, mitochondrion	86.99	86.99
Solyc02g092430.1.1	Tomato	nucleus	86.99	86.99
CDY23029	Canola	cytosol, mitochondrion	78.08	85.71
CDX68557	Canola	cytosol, mitochondrion	78.08	85.71
CDY70622	Canola	cytosol, mitochondrion	85.62	85.62
CDY02104	Canola	cytosol, mitochondrion	85.62	85.62
Bra036038.1-P	Field mustard	cytosol, mitochondrion	85.62	85.62
Bra029984.1-P	Field mustard	cytosol, mitochondrion	85.62	85.62
CDY30618	Canola	cytosol, mitochondrion	77.4	84.96
CDY17740	Canola	extracellular	84.93	84.93
Bra012916.1-P	Field mustard	cytosol, mitochondrion	84.93	84.93
AT5G67510.1	Thale cress	cytosol, plastid	84.93	84.93
KRH17569	Soybean	mitochondrion	67.81	81.82
Zm00001d041360_P001	Maize	cytosol	36.99	81.82
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	83.56	81.33
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	84.25	80.39
GSMUA_Achr8P18300_001	Banana	mitochondrion	84.25	80.39
GSMUA_Achr3P01440_001	Banana	mitochondrion	84.25	80.39
Zm00001d008594_P001	Maize	mitochondrion	83.56	77.71
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	83.56	77.71
Zm00001d039908_P001	Maize	plastid	83.56	77.71
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	83.56	77.71
TraesCS3D01G140800.1	Wheat	golgi, unclear	83.56	77.71
TraesCS3A01G313500.1	Wheat	nucleus	82.88	77.07
EES02512	Sorghum	mitochondrion	82.88	77.07
GSMUA_Achr6P09860_001	Banana	mitochondrion	83.56	76.73
Zm00001d005753_P001	Maize	mitochondrion	63.7	74.4
KRH00041	Soybean	nucleus	71.23	73.76
KRH57594	Soybean	mitochondrion	50.68	73.27
Zm00001d040875_P001	Maize	mitochondrion	62.33	72.8
Zm00001d032087_P001	Maize	mitochondrion	61.64	72.0
Zm00001d004528_P001	Maize	plastid	39.73	65.91
GSMUA_Achr10P...	Banana	cytosol	82.88	61.73
Zm00001d049904_P001	Maize	plastid	66.44	59.51
Os01t0140500-01	Rice	plasma membrane	41.78	47.29
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	53.42	36.97

Protein Annotations

EntrezGene:100788996	MapMan:17.1.2.1.26	Gene3D:2.30.30.30	EMBL:ACUP02006746	EMBL:BT096376	UniProt:C6TFI8
EnsemblPlantsGene:GLYMA_11G048100	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0042273	InterPro:IPR014722
InterPro:KOW	EnsemblPlants:KRH28357	ProteinID:KRH28357	ProteinID:KRH28357.1	HAMAP:MF_01326_A	PFAM:PF00467
PFAM:PF16906	ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS
InterPro:Ribosomal_L26/L24P_euk/arc	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0000E64869
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:3587578..3589297

Molecular Weight (calculated)

16717.4 Da

IEP (calculated)

11.646

GRAVY (calculated)

-0.793

Length

146 amino acids

Sequence
(BLAST)

001: MKFNPRVSSS RRKSRKAHFT APSSVRRVLM SAPLSTDLRS KYNVRSIPVR KDDEVQVVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GSTVNVGIHP
101: SKVVVTKLRM DKDRKSLLDR KAKGRAAADK EKGTKFAPED VMQTVD

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.