Factsheet for Zm00001d008594_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02512	Sorghum	mitochondrion	98.73	98.73
TraesCS3D01G140800.1	Wheat	golgi, unclear	97.45	97.45
Zm00001d039908_P001	Maize	plastid	97.45	97.45
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	97.45	97.45
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	96.82	96.82
TraesCS3A01G313500.1	Wheat	nucleus	96.82	96.82
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	91.08	95.33
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	91.08	93.46
Zm00001d041360_P001	Maize	cytosol	37.58	89.39
GSMUA_Achr6P09860_001	Banana	mitochondrion	87.26	86.16
GSMUA_Achr3P01440_001	Banana	mitochondrion	83.44	85.62
GSMUA_Achr8P18300_001	Banana	mitochondrion	82.8	84.97
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	77.71	83.56
Solyc03g044000.1.1	Tomato	nucleus	77.71	83.56
KRH28357	Soybean	cytosol, mitochondrion	77.71	83.56
KRH77124	Soybean	mitochondrion	77.07	82.88
KRH10767	Soybean	cytosol, mitochondrion	77.07	82.88
KRH21559	Soybean	nucleus	75.8	81.51
KRH21509	Soybean	nucleus	75.8	81.51
Solyc02g064670.1.1	Tomato	nucleus, unclear	75.8	81.51
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	75.16	80.82
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	75.16	80.82
Bra029984.1-P	Field mustard	cytosol, mitochondrion	74.52	80.14
Bra036038.1-P	Field mustard	cytosol, mitochondrion	74.52	80.14
Solyc02g092430.1.1	Tomato	nucleus	74.52	80.14
CDY70622	Canola	cytosol, mitochondrion	74.52	80.14
AT3G49910.1	Thale cress	cytosol, mitochondrion	74.52	80.14
CDY02104	Canola	cytosol, mitochondrion	74.52	80.14
Zm00001d005753_P001	Maize	mitochondrion	63.69	80.0
Zm00001d040875_P001	Maize	mitochondrion	63.69	80.0
CDY17740	Canola	extracellular	73.89	79.45
Bra012916.1-P	Field mustard	cytosol, mitochondrion	73.89	79.45
Zm00001d032087_P001	Maize	mitochondrion	63.06	79.2
CDX68557	Canola	cytosol, mitochondrion	66.88	78.95
CDY23029	Canola	cytosol, mitochondrion	66.88	78.95
CDY30618	Canola	cytosol, mitochondrion	66.24	78.2
AT5G67510.1	Thale cress	cytosol, plastid	71.97	77.4
Zm00001d004528_P001	Maize	plastid	40.76	72.73
GSMUA_Achr10P...	Banana	cytosol	85.35	68.37
KRH17569	Soybean	mitochondrion	49.68	64.46
KRH00041	Soybean	nucleus	57.32	63.83
Zm00001d049904_P001	Maize	plastid	66.24	63.8
VIT_01s0010g03220.t01	Wine grape	cytosol	21.66	61.82
KRH57594	Soybean	mitochondrion	36.31	56.44
Os01t0140500-01	Rice	plasma membrane	42.04	51.16
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	49.68	36.97

Protein Annotations

EntrezGene:100285268	MapMan:17.1.2.1.26	Gene3D:2.30.30.30	ProteinID:AQK90223.1	UniProt:B6TPG2	EMBL:BT087727
EMBL:EU966877	EMBL:EU971472	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:IPR014722
InterPro:KOW	HAMAP:MF_01326_A	PFAM:PF00467	PFAM:PF16906	ScanProsite:PS01108	PANTHER:PTHR11143
PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc	SMART:SM00739	SUPFAM:SSF50104
TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000182E0AD	EnsemblPlantsGene:Zm00001d008594	EnsemblPlants:Zm00001d008594_P001	EnsemblPlants:Zm00001d008594_T001
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L26-1

Coordinates

chr8:+:13894290..13894763

Molecular Weight (calculated)

17532.4 Da

IEP (calculated)

11.710

GRAVY (calculated)

-0.643

Length

157 amino acids

Sequence
(BLAST)

001: MKRNPRVTSS RRKCRKAHFT APSSVRRVLM SAALSTELRH KYNVRSIPIR KDDEVQVVRG TYKGREGKVV QVYRRRWVIH VERITREKVN GSTVNVGIHP
101: SKVMVTKLKL DKDRKALLDR KARGRAADKA KGKFTADDVA AAAGGAAATG ASLQEID

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.