CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21559	Soybean	nucleus	98.63	98.63
KRH10767	Soybean	cytosol, mitochondrion	98.63	98.63
KRH77124	Soybean	mitochondrion	93.15	93.15
KRH28357	Soybean	cytosol, mitochondrion	92.47	92.47
Solyc03g044000.1.1	Tomato	nucleus	87.67	87.67
PGSC0003DMT400023405	Potato	cytosol, mitochondrion	87.67	87.67
VIT_07s0129g00160.t01	Wine grape	cytosol, mitochondrion	86.3	86.3
VIT_07s0129g00090.t01	Wine grape	cytosol, mitochondrion	86.3	86.3
Solyc02g064670.1.1	Tomato	nucleus, unclear	85.62	85.62
PGSC0003DMT400085766	Potato	cytosol, mitochondrion	85.62	85.62
PGSC0003DMT400055191	Potato	cytosol, mitochondrion	85.62	85.62
Solyc02g092430.1.1	Tomato	nucleus	84.93	84.93
AT3G49910.1	Thale cress	cytosol, mitochondrion	81.51	81.51
AT5G67510.1	Thale cress	cytosol, plastid	80.82	80.82
Os12t0150100-01	Rice	golgi, plasma membrane, plastid	82.88	80.67
CDY23029	Canola	cytosol, mitochondrion	73.29	80.45
CDX68557	Canola	cytosol, mitochondrion	73.29	80.45
CDY70622	Canola	cytosol, mitochondrion	80.14	80.14
Bra029984.1-P	Field mustard	cytosol, mitochondrion	80.14	80.14
Bra036038.1-P	Field mustard	cytosol, mitochondrion	80.14	80.14
CDY02104	Canola	cytosol, mitochondrion	80.14	80.14
Os11t0151300-01	Rice	nucleus, plasma membrane, plastid	83.56	79.74
CDY30618	Canola	cytosol, mitochondrion	72.6	79.7
CDY17740	Canola	extracellular	79.45	79.45
Bra012916.1-P	Field mustard	cytosol, mitochondrion	79.45	79.45
GSMUA_Achr8P18300_001	Banana	mitochondrion	82.88	79.08
GSMUA_Achr3P01440_001	Banana	mitochondrion	82.88	79.08
Zm00001d041360_P001	Maize	cytosol	35.62	78.79
KRH17569	Soybean	mitochondrion	63.7	76.86
HORVU3Hr1G026880.1	Barley	mitochondrion, plastid	82.19	76.43
TraesCS3B01G158400.1	Wheat	mitochondrion, plastid	82.19	76.43
TraesCS3D01G140800.1	Wheat	golgi, unclear	82.19	76.43
Zm00001d008594_P001	Maize	mitochondrion	81.51	75.8
Zm00001d039908_P001	Maize	plastid	81.51	75.8
TraesCS3A01G313500.1	Wheat	nucleus	81.51	75.8
GSMUA_Achr6P09860_001	Banana	mitochondrion	82.19	75.47
EES02512	Sorghum	mitochondrion	80.82	75.16
Zm00001d005753_P001	Maize	mitochondrion	62.33	72.8
KRH57594	Soybean	mitochondrion	49.32	71.29
Zm00001d040875_P001	Maize	mitochondrion	60.96	71.2
Zm00001d032087_P001	Maize	mitochondrion	60.27	70.4
KRH00041	Soybean	nucleus	67.81	70.21
Zm00001d004528_P001	Maize	plastid	38.36	63.64
GSMUA_Achr10P...	Banana	cytosol	81.51	60.71
Zm00001d049904_P001	Maize	plastid	65.07	58.28
Os01t0140500-01	Rice	plasma membrane	41.1	46.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	54.79	37.91

Protein Annotations

EntrezGene:100818263	MapMan:17.1.2.1.26	Gene3D:2.30.30.30	EMBL:ACUP02008358	EnsemblPlantsGene:GLYMA_13G243100	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0022625	GO:GO:0042273	UniProt:I1M290	InterPro:IPR014722	InterPro:KOW
EnsemblPlants:KRH21509	ProteinID:KRH21509	ProteinID:KRH21509.1	HAMAP:MF_01326_A	PFAM:PF00467	PFAM:PF16906
ScanProsite:PS01108	PANTHER:PTHR11143	PANTHER:PTHR11143:SF13	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	InterPro:Ribosomal_L26/L24P_euk/arc
SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01080	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000233B0C6	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:35256095..35257810

Molecular Weight (calculated)

16699.4 Da

IEP (calculated)

11.566

GRAVY (calculated)

-0.788

Length

146 amino acids

Sequence
(BLAST)

001: MKFNPRVSSS RRKSRKAHFT APSSVRRVLM SAPLSAELRS KYNVRSIPVR KEDEVQVVRG TYKGREGKVT QVYRRKWVIH IERITREKVN GSTVNVGIHP
101: SKVVLTKLKL DKDRKAILDR KAKGRAASDK EKGTKFAPED IMQTVD

Best Arabidopsis Sequence Match ( AT3G49910.1 )
(BLAST)

001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD

Arabidopsis Description

RPL26A60S ribosomal protein L26-1 [Source:UniProtKB/Swiss-Prot;Acc:P51414]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.