Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G179600.1 | Wheat | nucleus | 95.43 | 98.28 |
| TraesCS5D01G184200.2 | Wheat | nucleus | 95.28 | 98.12 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 93.46 | 96.39 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 35.62 | 91.41 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 75.19 | 81.52 |
| KXG37542 | Sorghum | nucleus | 73.36 | 80.2 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 71.69 | 78.5 |
| OQU89244 | Sorghum | nucleus | 74.12 | 77.67 |
| VIT_00s1675g00010.t01 | Wine grape | cytosol | 14.31 | 75.81 |
| Zm00001d034036_P003 | Maize | golgi | 68.49 | 73.89 |
| Zm00001d020036_P002 | Maize | nucleus | 73.21 | 70.22 |
| TraesCS2B01G020400.3 | Wheat | nucleus | 52.82 | 54.05 |
| GSMUA_Achr4P29640_001 | Banana | nucleus | 53.73 | 53.32 |
| VIT_02s0234g00050.t01 | Wine grape | nucleus | 29.68 | 51.72 |
| VIT_16s0013g00860.t01 | Wine grape | nucleus | 51.29 | 50.91 |
| GSMUA_Achr2P11170_001 | Banana | nucleus | 52.82 | 50.29 |
| KRH28171 | Soybean | nucleus | 32.12 | 49.65 |
| KRH77315 | Soybean | nucleus | 32.27 | 49.53 |
| Solyc03g093640.2.1 | Tomato | nucleus | 48.1 | 49.53 |
| AT5G51230.1 | Thale cress | nucleus | 47.18 | 49.13 |
| CDY16330 | Canola | nucleus | 46.73 | 48.58 |
| Bra022541.1-P | Field mustard | nucleus | 46.73 | 48.58 |
| CDX91573 | Canola | nucleus | 46.42 | 48.41 |
| CDY43476 | Canola | nucleus | 10.96 | 48.32 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 46.27 | 48.1 |
| CDY00460 | Canola | nucleus, plastid | 46.27 | 48.1 |
| CDX99960 | Canola | nucleus | 46.12 | 47.94 |
| KRG90126 | Soybean | nucleus | 43.38 | 46.88 |
| KRH33365 | Soybean | nucleus | 43.38 | 46.88 |
| CDY00458 | Canola | cytosol | 22.22 | 42.44 |
| Bra015201.1-P | Field mustard | cytosol | 22.07 | 42.15 |
| CDY71414 | Canola | nucleus | 24.05 | 39.3 |
| VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 13.39 | 37.93 |
| AT4G16845.1 | Thale cress | nucleus | 25.27 | 37.73 |
| CDX76587 | Canola | nucleus | 23.9 | 37.12 |
| Bra021078.1-P | Field mustard | nucleus | 23.74 | 36.71 |
| CDX84180 | Canola | cytosol | 9.13 | 27.4 |
| Bra005316.1-P | Field mustard | nucleus | 9.44 | 26.16 |
| CDY42943 | Canola | nucleus | 18.42 | 26.02 |
| Bra040097.1-P | Field mustard | nucleus | 18.42 | 26.02 |
| CDY35632 | Canola | cytosol | 17.81 | 25.89 |
| CDY33160 | Canola | nucleus | 15.37 | 21.96 |
| CDY31712 | Canola | nucleus | 11.57 | 21.78 |
| KRH34601 | Soybean | nucleus | 25.72 | 21.56 |
| CDY38857 | Canola | nucleus | 22.83 | 20.16 |
| Bra029179.1-P | Field mustard | nucleus | 26.48 | 20.14 |
| CDX75032 | Canola | mitochondrion, nucleus | 11.42 | 19.63 |
| Bra005262.1-P | Field mustard | mitochondrion | 11.42 | 19.63 |
| CDX84179 | Canola | cytosol | 11.72 | 18.87 |
| AT4G16810.1 | Thale cress | nucleus | 8.22 | 18.0 |
| AT2G35670.1 | Thale cress | nucleus | 15.53 | 13.51 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G177400.2 | EnsemblPlantsGene:TraesCS5B01G177400 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF0 | PFAM:PF09733 |
| SEG:seg | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:323858201..323870048
Molecular Weight (calculated)
74233.0 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.363
Length
657 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGLPLPARD AADAGCEFSY PQSADQMRQQ QLRARLSPDE QLAAEESFAL YCKPVELYNI IQRRAIRNPA FLQRCLHYKI HASRKKRDFT IMYFADSFSS
101: LGTAYIRIQI TVSLSRSTNT ELPEQNIFPL YVLLATPTSN ISLEGHSPIY RFSRACLLTA FSEFGNKGRT KATFIIPDIK NLSTSRACNL NIILISCVSE
201: GQVGENLGES NFSVDHVEGS ALQKLEGKCF WGKIPIDLLG SSLENCVTLN LGHTVELASA VSMSPSFLEP KFMEQDSCLT FCSHKVDAAG SYQLQVGISA
301: QEAGAKDMSE SPYSSYSYSG VPPSSLPHII RLRAGNVLFN FKYYNNTMQK TEVTEDFACP FCLVKCGSYK GLGCHLNSSH DLFHFEFWIS EECQAVNVSL
401: KTDVWRTELV AEGVDPRHQT FSYSSRFKKR RRLGMLGTTA EKISHVHPHI MDSDSPEDAQ AVSEDDFVQR EEDDISAPRA SVDPAQLLHG SNLSPPTVLQ
501: FGKTRKLSAE RADPRNRQLL QKRQFFHSHR AQPMALEQVF SDRDSEDEVD DDIADFEDKR MLEDFVDVTD DEKLIMHMWN SFVRKQRVLA DGHIPWACEA
601: FSRLHGKHLV QNPPLLWSWR FLMIKLWNHS LLDARAMNVC GTILQGYQNE SSDPKKM
101: LGTAYIRIQI TVSLSRSTNT ELPEQNIFPL YVLLATPTSN ISLEGHSPIY RFSRACLLTA FSEFGNKGRT KATFIIPDIK NLSTSRACNL NIILISCVSE
201: GQVGENLGES NFSVDHVEGS ALQKLEGKCF WGKIPIDLLG SSLENCVTLN LGHTVELASA VSMSPSFLEP KFMEQDSCLT FCSHKVDAAG SYQLQVGISA
301: QEAGAKDMSE SPYSSYSYSG VPPSSLPHII RLRAGNVLFN FKYYNNTMQK TEVTEDFACP FCLVKCGSYK GLGCHLNSSH DLFHFEFWIS EECQAVNVSL
401: KTDVWRTELV AEGVDPRHQT FSYSSRFKKR RRLGMLGTTA EKISHVHPHI MDSDSPEDAQ AVSEDDFVQR EEDDISAPRA SVDPAQLLHG SNLSPPTVLQ
501: FGKTRKLSAE RADPRNRQLL QKRQFFHSHR AQPMALEQVF SDRDSEDEVD DDIADFEDKR MLEDFVDVTD DEKLIMHMWN SFVRKQRVLA DGHIPWACEA
601: FSRLHGKHLV QNPPLLWSWR FLMIKLWNHS LLDARAMNVC GTILQGYQNE SSDPKKM
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Arabidopsis Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.