Factsheet for VIT_02s0234g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1675g00010.t01	Wine grape	cytosol	32.89	100.0
TraesCSU01G224600.1	Wheat	nucleus	24.93	75.81
TraesCSU01G194400.1	Wheat	nucleus	24.93	75.81
GSMUA_Achr2P11140_001	Banana	cytosol	18.83	63.96
VIT_16s0013g00860.t01	Wine grape	nucleus	62.6	35.65
Os09t0306800-01	Rice	cytosol, nucleus	53.05	33.0
KXG37542	Sorghum	nucleus	51.99	32.61
Zm00001d034036_P003	Maize	golgi	51.72	32.02
TraesCS2A01G000100.1	Wheat	nucleus	50.66	31.62
TraesCS2D01G000600.1	Wheat	cytosol	50.4	31.51
KRG90126	Soybean	nucleus	50.66	31.41
TraesCS2B01G023900.1	Wheat	cytosol	49.87	31.33
OQU89244	Sorghum	nucleus	51.99	31.26
KRH33365	Soybean	nucleus	50.4	31.25
HORVU2Hr1G000010.32	Barley	nucleus	50.13	31.19
HORVU5Hr1G054730.1	Barley	nucleus	51.99	30.77
TraesCS5A01G179600.1	Wheat	nucleus	51.46	30.41
TraesCS5D01G184200.2	Wheat	nucleus	51.19	30.25
TraesCS5B01G177400.2	Wheat	nucleus	51.72	29.68
Zm00001d020036_P002	Maize	nucleus	51.72	28.47
Os04t0162100-01	Rice	nucleus	43.77	26.44
KXG25810	Sorghum	nucleus	40.32	25.08
TraesCS2B01G020400.3	Wheat	nucleus	41.11	24.14
TraesCS2A01G002500.1	Wheat	nucleus	40.85	23.77
HORVU2Hr1G000390.20	Barley	nucleus	41.64	23.75
TraesCS4D01G183300.1	Wheat	nucleus	5.31	15.62
TraesCS5D01G388900.1	Wheat	nucleus	5.04	14.84
KRH34601	Soybean	nucleus	26.79	12.88
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	7.16	11.64
TraesCS3B01G073800.1	Wheat	nucleus	1.86	2.73

Protein Annotations

EntrezGene:100245153	wikigene:100245153	MapMan:12.3.3.1.1.3	MapMan:15.5.15	EMBL:AM447481	ProteinID:CAN63177
ProteinID:CAN63177.1	ProteinID:CCB50069	ProteinID:CCB50069.1	ProteinID:CCB61142	ProteinID:CCB61142.1	UniProt:F6HCX4
EMBL:FN595528	EMBL:FN596630	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0031490
EntrezGene:LOC100245153	wikigene:LOC100245153	PFAM:PF09733	PANTHER:PTHR22597	PANTHER:PTHR22597:SF8	InterPro:Polycomb_protein_VEFS-Box
UniParc:UPI0002109E0C	ArrayExpress:VIT_02s0234g00050	EnsemblPlantsGene:VIT_02s0234g00050	EnsemblPlants:VIT_02s0234g00050.t01	unigene:Vvi.20267	RefSeq:XP_002264066
RefSeq:XP_002264066.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:59724..78128

Molecular Weight (calculated)

43424.7 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.393

Length

377 amino acids

Sequence
(BLAST)

001: MSCIEIVPKK ENRYILVQKA IFTVTENFSC PFCLMQCASF KGLRYHLCSS HDLFNFDFWV TEEYQAVNVS VKVDILRSEI MADGVDPRLQ TFFWCSKPHK
101: RRRLKNQVQN ANHVFLHFLE SGSPNFFSEA HKGFLEKDDD ALSCEGEKSS MSLPCQKDLQ NARPVAESYA IGKPSAVECI ERVASNLNET GVPIAMAQSS
201: VDMECVQSIS GSPTPPAVLQ FPKTRKLSFE RSEPRNRTLL QKRQFFHSHR AQPMALDQVL SDRDSEDEVD DDIADFEDRR MLDDFVDVTK DEKQFMHLWN
301: SFVRKQRVLA DGHIPWACEA FSKLHGQELV QAPAIFWCWR LFMIKLWNHG LLDARTMNSC NLVLEGYRNE VSDTMKS

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.