Factsheet for Zm00001d020036_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006683_P001
Zm00001d013702_P001
Zm00001d024698_P002
Zm00001d028890_P002
Zm00001d033247_P001
Zm00001d033248_P002
Zm00001d033252_P001
Zm00001d036296_P004
Zm00001d045055_P001
Zm00001d047636_P002
Zm00001d049608_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	Zm00001d028890_P002	AT1G02580.1	15456723
AT2G35670.1	Zm00001d047636_P002	AT1G02580.1	15456723
AT2G35670.1	Zm00001d028890_P002	AT1G02580.1	16924116
AT2G35670.1	Zm00001d047636_P002	AT1G02580.1	16924116
AT2G35670.1	Zm00001d036296_P004	AT2G23380.1	15456723
AT2G35670.1	Zm00001d036296_P004	AT2G23380.1	16924116
AT2G35670.1	Zm00001d028890_P002	AT4G02020.1	15456723
AT2G35670.1	Zm00001d047636_P002	AT4G02020.1	15456723
AT2G35670.1	Zm00001d028890_P002	AT4G02020.1	16924116
AT2G35670.1	Zm00001d047636_P002	AT4G02020.1	16924116
AT4G16845.1	Zm00001d036296_P004	AT2G23380.1	15456723
AT4G16845.1	Zm00001d028890_P002	AT4G02020.1	15456723
AT4G16845.1	Zm00001d047636_P002	AT4G02020.1	15456723
AT5G51230.1	Zm00001d006683_P001	AT1G30530.1	23778966
AT5G51230.1	Zm00001d045055_P001	AT1G30530.1	23778966
AT5G51230.1	Zm00001d036296_P004	AT2G23380.1	15456723
AT5G51230.1	Zm00001d024698_P002	AT3G20740.1	23778966
AT5G51230.1	Zm00001d049608_P001	AT3G20740.1	23778966
AT5G51230.1	Zm00001d028890_P002	AT4G02020.1	15456723
AT5G51230.1	Zm00001d047636_P002	AT4G02020.1	15456723
AT5G51230.1	Zm00001d028890_P002	AT4G02020.1	23778966
AT5G51230.1	Zm00001d047636_P002	AT4G02020.1	23778966
AT5G51230.1	Zm00001d013702_P001	AT5G58230.1	23778966
AT5G51230.1	Zm00001d033247_P001	AT5G58230.1	23778966
AT5G51230.1	Zm00001d033248_P002	AT5G58230.1	23778966
AT5G51230.1	Zm00001d033252_P001	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89244	Sorghum	nucleus	86.28	94.26
HORVU5Hr1G054730.1	Barley	nucleus	70.36	75.67
TraesCS5A01G179600.1	Wheat	nucleus	70.07	75.24
TraesCS5D01G184200.2	Wheat	nucleus	70.07	75.24
VIT_00s1675g00010.t01	Wine grape	cytosol	13.58	75.0
Zm00001d034036_P003	Maize	golgi	66.42	74.71
TraesCS5B01G177400.2	Wheat	nucleus	70.22	73.21
TraesCS2D01G000600.1	Wheat	cytosol	62.34	70.81
HORVU2Hr1G000010.32	Barley	nucleus	62.63	70.79
TraesCS2A01G000100.1	Wheat	nucleus	62.04	70.36
TraesCS2B01G023900.1	Wheat	cytosol	61.61	70.33
TraesCSU01G075500.1	Wheat	nucleus	32.41	69.59
TraesCS3B01G073800.1	Wheat	nucleus	24.96	66.8
VIT_02s0234g00050.t01	Wine grape	nucleus	28.47	51.72
GSMUA_Achr4P29640_001	Banana	nucleus	49.93	51.66
VIT_16s0013g00860.t01	Wine grape	nucleus	48.47	50.15
KRH28171	Soybean	nucleus	30.95	49.88
KRH77315	Soybean	nucleus	30.95	49.53
GSMUA_Achr2P11170_001	Banana	nucleus	49.49	49.13
Solyc03g093640.2.1	Tomato	nucleus	45.4	48.75
CDY43476	Canola	nucleus	10.51	48.32
AT5G51230.1	Thale cress	nucleus	44.38	48.18
CDX91573	Canola	nucleus	44.23	48.1
CDY16330	Canola	nucleus	44.09	47.78
Bra022541.1-P	Field mustard	nucleus	44.09	47.78
CDY00460	Canola	nucleus, plastid	43.5	47.15
Bra015200.1-P	Field mustard	nucleus, plastid	43.5	47.15
CDX99960	Canola	nucleus	43.36	46.99
KRH33365	Soybean	nucleus	40.0	45.07
KRG90126	Soybean	nucleus	38.83	43.75
CDY00458	Canola	cytosol	21.75	43.31
Bra015201.1-P	Field mustard	cytosol	21.61	43.02
CDY71414	Canola	nucleus	23.36	39.8
CDX76587	Canola	nucleus	23.5	38.06
AT4G16845.1	Thale cress	nucleus	24.38	37.95
Bra021078.1-P	Field mustard	nucleus	23.36	37.65
TraesCS4D01G183300.1	Wheat	nucleus	7.01	37.5
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	12.55	37.07
TraesCS5D01G388900.1	Wheat	nucleus	6.57	35.16
CDX84180	Canola	cytosol	8.91	27.85
Bra005316.1-P	Field mustard	nucleus	9.49	27.43
CDY42943	Canola	nucleus	16.5	24.3
Bra040097.1-P	Field mustard	nucleus	16.5	24.3
CDY35632	Canola	cytosol	15.47	23.45
CDY31712	Canola	nucleus	11.24	22.06
CDY33160	Canola	nucleus	14.6	21.74
KRH34601	Soybean	nucleus	24.23	21.17
CDX75032	Canola	mitochondrion, nucleus	10.95	19.63
Bra005262.1-P	Field mustard	mitochondrion	10.95	19.63
Bra029179.1-P	Field mustard	nucleus	24.53	19.44
CDY38857	Canola	nucleus	21.02	19.35
CDX84179	Canola	cytosol	11.39	19.12
AT4G16810.1	Thale cress	nucleus	7.74	17.67
AT2G35670.1	Thale cress	nucleus	15.91	14.44

Protein Annotations

EnsemblPlants:Zm00001d020036_P002	EnsemblPlants:Zm00001d020036_T002	EnsemblPlantsGene:Zm00001d020036	EntrezGene:542512	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597
PANTHER:PTHR22597:SF0	PFAM:PF09733	ProteinID:ONM54143.1	SEG:seg	UniParc:UPI000842D60C	UniProt:A0A1D6I1P6
MapMan:12.3.3.1.1.3	MapMan:15.5.15	:	:	:	:

Description

Embryonic flower 2%3B VEF family protein

Coordinates

chr7:+:87375993..87448666

Molecular Weight (calculated)

78268.9 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.440

Length

685 amino acids

Sequence
(BLAST)

001: MPGLPLPQSL NQNIGCEYAY PGSTGQAFRQ QLRTALSPDE KLTAEKDLAL YCKPVELYNI IQRRAMKNPL FIQRCLLYNI HARRKKRIQI TISLSGSTNT
101: ELQTHYVFPL YVLLARPTSN LSLEGHSPIY RFSRVCLLTS FSEHGNKDNS EATFIIPDVK SLSTSRACNH DIIFISCGQV GQSNGEDNCS GNHVEDSSLQ
201: MLEGKCSWGK IPTNLLASSL ESCVNLSLGH IVELASKVTM RPSFLEPKFL EQDSCLTFCS HKVDAVVRYA SLATASPLDD MSLHHKFINS ALGIHCHRMR
301: YIHFSMELLE NDFSFQFKCP KLLAKGSYKL QLCMSAQEAG ARDMSLSPYS SYSYNDVPPS SLSDIIRLRS GNVLFNYKYY NNTMQETEVT EDFSCPFCYV
401: RCGSFKGLGC HLNSSHDLFH YEFWISEEYQ VVNVSLKADA WRTELFAEGV DPRHQTFSYR SRFKKRRRSK NTMEKIRHVH SHIMESGSPE DEAGSEDNFV
501: QGENGTSVAN ASIDPAQSLH GSNLSPPTVL QFGKTRKLSE RSDPRNRQLL QKRQFFHSHR AQPMQLEQVF SDRDSEDEVD DDIADFEDRR MLDDFVDVTK
601: DEKLIMHMWN SFVRKQRVLA DGHIPWACEA FSQLHGRQLI QNPALLWGWR FFMIKLWNHN ILDARTMNTC NTVLQILQEE STGLK

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.