Factsheet for VIT_16s0013g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01960.t01
VIT_06s0009g01990.t01
VIT_06s0009g02000.t01
VIT_06s0009g02010.t01
VIT_07s0005g00010.t01
VIT_07s0005g00030.t01
VIT_07s0005g01490.t01
VIT_07s0031g00320.t01
VIT_11s0052g01580.t01
VIT_11s0052g01600.t01
VIT_11s0052g01630.t01
VIT_11s0052g01640.t01
VIT_16s0013g01550.t01
VIT_16s0039g02230.t01
VIT_19s0014g05210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51230.1	VIT_07s0005g00010.t01	AT1G02930.1	23778966
AT5G51230.1	VIT_07s0005g00030.t01	AT1G02930.1	23778966
AT5G51230.1	VIT_06s0009g01960.t01	AT1G30530.1	23778966
AT5G51230.1	VIT_06s0009g01990.t01	AT1G30530.1	23778966
AT5G51230.1	VIT_06s0009g02000.t01	AT1G30530.1	23778966
AT5G51230.1	VIT_06s0009g02010.t01	AT1G30530.1	23778966
AT5G51230.1	VIT_11s0052g01580.t01	AT1G30530.1	23778966
AT5G51230.1	VIT_11s0052g01600.t01	AT1G30530.1	23778966
AT5G51230.1	VIT_11s0052g01630.t01	AT1G30530.1	23778966
AT5G51230.1	VIT_11s0052g01640.t01	AT1G30530.1	23778966
AT5G51230.1	VIT_16s0039g02230.t01	AT1G30530.1	23778966
AT5G51230.1	VIT_07s0031g00320.t01	AT2G23380.1	15456723
AT5G51230.1	VIT_19s0014g05210.t01	AT3G20740.1	23778966
AT5G51230.1	VIT_07s0005g01490.t01	AT4G02020.1	15456723
AT5G51230.1	VIT_07s0005g01490.t01	AT4G02020.1	23778966
AT5G51230.1	VIT_16s0013g01550.t01	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1675g00010.t01	Wine grape	cytosol	15.11	80.65
TraesCSU01G194400.1	Wheat	nucleus	13.6	72.58
TraesCSU01G224600.1	Wheat	nucleus	13.6	72.58
Solyc03g093640.2.1	Tomato	nucleus	64.5	66.93
GSMUA_Achr2P11140_001	Banana	cytosol	11.03	65.77
AT5G51230.1	Thale cress	nucleus	61.18	64.18
CDX99960	Canola	nucleus	61.03	63.92
Bra015200.1-P	Field mustard	nucleus, plastid	60.73	63.61
CDY00460	Canola	nucleus, plastid	60.73	63.61
VIT_02s0234g00050.t01	Wine grape	nucleus	35.65	62.6
CDX91573	Canola	nucleus	57.85	60.79
CDY16330	Canola	nucleus	57.85	60.6
Bra022541.1-P	Field mustard	nucleus	57.85	60.6
KXG37542	Sorghum	nucleus	50.0	55.07
Os09t0306800-01	Rice	cytosol, nucleus	50.3	54.95
TraesCS2B01G023900.1	Wheat	cytosol	48.64	53.67
TraesCS2A01G000100.1	Wheat	nucleus	48.64	53.31
TraesCS2D01G000600.1	Wheat	cytosol	48.49	53.23
OQU89244	Sorghum	nucleus	50.0	52.79
HORVU5Hr1G054730.1	Barley	nucleus	50.76	52.75
TraesCS5A01G179600.1	Wheat	nucleus	50.76	52.66
TraesCS5D01G184200.2	Wheat	nucleus	50.6	52.51
HORVU2Hr1G000010.32	Barley	nucleus	48.04	52.48
TraesCS5B01G177400.2	Wheat	nucleus	50.91	51.29
Zm00001d034036_P003	Maize	golgi	46.98	51.07
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	17.22	49.14
Zm00001d020036_P002	Maize	nucleus	50.15	48.47
Os04t0162100-01	Rice	nucleus	42.9	45.51
KXG25810	Sorghum	nucleus	40.79	44.55
TraesCS2A01G002500.1	Wheat	nucleus	42.75	43.67
TraesCS2B01G020400.3	Wheat	nucleus	41.84	43.15
HORVU2Hr1G000390.20	Barley	nucleus	42.45	42.51
TraesCS3B01G073800.1	Wheat	nucleus	15.71	40.62
TraesCS4D01G183300.1	Wheat	nucleus	7.7	39.84
TraesCS5D01G388900.1	Wheat	nucleus	7.4	38.28

Protein Annotations

EntrezGene:100252876	wikigene:100252876	MapMan:12.3.3.1.1.3	MapMan:15.5.15	ProteinID:CCB61202	ProteinID:CCB61202.1
UniProt:F6I2N5	EMBL:FN596738	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006349	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0031490
GO:GO:0040029	EntrezGene:LOC100252876	wikigene:LOC100252876	PFAM:PF09733	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0
InterPro:Polycomb_protein_VEFS-Box	TIGR:TC56116	TIGR:TC56968	UniParc:UPI00021093F1	ArrayExpress:VIT_16s0013g00860	EnsemblPlantsGene:VIT_16s0013g00860
EnsemblPlants:VIT_16s0013g00860.t01	RefSeq:XP_002281679	RefSeq:XP_002281679.2	RefSeq:XP_010662244.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:6368533..6436142

Molecular Weight (calculated)

74496.6 Da

IEP (calculated)

7.856

GRAVY (calculated)

-0.381

Length

662 amino acids

Sequence
(BLAST)

001: MPGIPLVARE TIYSRSADQM CRQDSRVHLS AEEEIAAEES LSIYCKPVEL YNILQRRAVG NPSFLQRCLR YKIQAKHKRR IQMTISLPGS TYDGVQAQSP
101: FPLYILLARP ISDIALAEYP AVYRFNRACI LTSSTRVDGS HQAQANFILP DISKLAMESK SGSLTILIVK CAESKESISG FGLPKDIMDM APFSTNVGGH
201: CLWGKVPMES LYLSWKMSPN LSLGQRAEII STVDLHPCFM KSSCLDDDKC ISFQNPYNSG TLSKAQQFQV IISAEEVGAK DKSPYNSYTY TDVPTSSLSD
301: IIRLRTGNVI FNYRYYNNKL QRTEVTEDFS CPFCLVKCAS FKGLRYHLSS SHDLFNFEFW VTEEYQAVNV SVKTDIWRTE IVADGVDPKQ QTFSFCSKPL
401: RRRRSKNLAQ NAKHVHPLTL ESDLHAVVSN LGKANDAHSS KGERARILSG NDSQAVPGAA LCVERVLSSH NVPGVSSATV QSNADPECVQ SGPASNLAPP
501: ALLQFAKTRK LSIERSDPRS RALLQKRQFF HSHRAQPMGM EQVLSDRDSE DEVDDDVADF EDRRMLDDFV DVTKDEKQLM HLWNSFVRKQ RVLADGHIPW
601: ACEAFSRLHG HDLAQAPALS WCWRLFMIKL WNHGLLDARA MNNCNKIIEQ CNKNQDSDPK TS

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.