Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G075500.1 | Wheat | nucleus | 77.73 | 62.38 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 91.41 | 35.62 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 87.5 | 35.16 |
| TraesCS4D01G183300.1 | Wheat | nucleus | 15.62 | 31.25 |
| TraesCS5D01G388900.1 | Wheat | nucleus | 14.45 | 28.91 |
| VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 26.17 | 28.88 |
| OQU89244 | Sorghum | nucleus | 67.58 | 27.59 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 64.84 | 27.39 |
| KXG37542 | Sorghum | nucleus | 62.89 | 26.79 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 60.16 | 25.67 |
| Zm00001d020036_P002 | Maize | nucleus | 66.8 | 24.96 |
| Zm00001d034036_P003 | Maize | golgi | 50.78 | 21.35 |
| TraesCS2B01G020400.3 | Wheat | nucleus | 53.52 | 21.34 |
| GSMUA_Achr4P29640_001 | Banana | nucleus | 49.22 | 19.03 |
| GSMUA_Achr2P11170_001 | Banana | nucleus | 51.17 | 18.99 |
| CDY43476 | Canola | nucleus | 10.16 | 17.45 |
| VIT_16s0013g00860.t01 | Wine grape | nucleus | 40.62 | 15.71 |
| Solyc03g093640.2.1 | Tomato | nucleus | 39.06 | 15.67 |
| AT5G51230.1 | Thale cress | nucleus | 38.28 | 15.53 |
| CDX91573 | Canola | nucleus | 37.11 | 15.08 |
| Bra022541.1-P | Field mustard | nucleus | 37.11 | 15.03 |
| CDY16330 | Canola | nucleus | 37.11 | 15.03 |
| CDY00460 | Canola | nucleus, plastid | 36.33 | 14.72 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 36.33 | 14.72 |
| CDX99960 | Canola | nucleus | 36.33 | 14.72 |
| KRG90126 | Soybean | nucleus | 30.47 | 12.83 |
| KRH33365 | Soybean | nucleus | 30.47 | 12.83 |
| CDY38857 | Canola | nucleus | 28.12 | 9.68 |
| CDX84180 | Canola | cytosol | 7.81 | 9.13 |
| Bra029179.1-P | Field mustard | nucleus | 28.52 | 8.45 |
| KRH77315 | Soybean | nucleus | 13.67 | 8.18 |
| KRH28171 | Soybean | nucleus | 13.28 | 8.0 |
| AT4G16845.1 | Thale cress | nucleus | 12.5 | 7.27 |
| CDY71414 | Canola | nucleus | 10.94 | 6.97 |
| KRH34601 | Soybean | nucleus | 21.09 | 6.89 |
| CDX76587 | Canola | nucleus | 10.55 | 6.38 |
| Bra021078.1-P | Field mustard | nucleus | 10.55 | 6.35 |
| Bra005316.1-P | Field mustard | nucleus | 4.69 | 5.06 |
| CDY33160 | Canola | nucleus | 8.59 | 4.78 |
| CDY35632 | Canola | cytosol | 8.2 | 4.65 |
| AT2G35670.1 | Thale cress | nucleus | 13.28 | 4.5 |
| Bra040097.1-P | Field mustard | nucleus | 7.81 | 4.3 |
| CDY42943 | Canola | nucleus | 7.81 | 4.3 |
| CDY31712 | Canola | nucleus | 4.69 | 3.44 |
| CDX84179 | Canola | cytosol | 4.69 | 2.94 |
| Bra015201.1-P | Field mustard | cytosol | 3.91 | 2.91 |
| CDY00458 | Canola | cytosol | 3.91 | 2.91 |
| VIT_02s0234g00050.t01 | Wine grape | nucleus | 2.73 | 1.86 |
| AT4G16810.1 | Thale cress | nucleus | 1.17 | 1.0 |
| VIT_00s1675g00010.t01 | Wine grape | cytosol | 0.39 | 0.81 |
| Bra005262.1-P | Field mustard | mitochondrion | 0.78 | 0.52 |
| CDX75032 | Canola | mitochondrion, nucleus | 0.78 | 0.52 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G073800.1 | EnsemblPlantsGene:TraesCS3B01G073800 | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF0 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3B:-:44659710..44667769
Molecular Weight (calculated)
28535.3 Da
IEP (calculated)
6.984
GRAVY (calculated)
-0.171
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGLPLPDWD AADAGCEFSY PQSADQMRQQ QLRARLSPDE QLAAEESFAL YCKPVELYNI IQRRAIRNLA FLQRCLHYKI HASRKKRIQI TISLSRSTNT
101: ELPEQNIFPL YVLLATPTSN ISLEGHSPIY RFSRACLLTT FSEFGNKGRT NATFITPDIK NLSTSRPCNL NIIVISCVSE GKVGENLGEN LVDHVEGPAL
201: QKLEGKCFWG KIPMDLLGSS LENCVTLNLG HTVELASAVS MSPSFLEPKF MEQTVA
101: ELPEQNIFPL YVLLATPTSN ISLEGHSPIY RFSRACLLTT FSEFGNKGRT NATFITPDIK NLSTSRPCNL NIIVISCVSE GKVGENLGEN LVDHVEGPAL
201: QKLEGKCFWG KIPMDLLGSS LENCVTLNLG HTVELASAVS MSPSFLEPKF MEQTVA
001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
Arabidopsis Description
EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.