CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029179.1-P	Field mustard	nucleus	56.18	48.38
CDY43476	Canola	nucleus	8.2	40.94
CDY16330	Canola	nucleus	32.93	38.77
CDX91573	Canola	nucleus	32.8	38.73
CDY00460	Canola	nucleus, plastid	32.66	38.45
CDX99960	Canola	nucleus	32.26	37.97
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	9.01	28.88
TraesCS3B01G073800.1	Wheat	nucleus	9.68	28.12
KRH33365	Soybean	nucleus	22.45	27.47
KRG90126	Soybean	nucleus	22.04	26.97
Os09t0306800-01	Rice	cytosol, nucleus	20.16	24.75
KXG37542	Sorghum	nucleus	19.76	24.46
TraesCS5D01G184200.2	Wheat	nucleus	20.3	23.67
TraesCS5A01G179600.1	Wheat	nucleus	20.3	23.67
HORVU5Hr1G054730.1	Barley	nucleus	20.16	23.55
HORVU2Hr1G000010.32	Barley	nucleus	18.95	23.27
TraesCS2B01G023900.1	Wheat	cytosol	18.68	23.17
CDY71414	Canola	nucleus	12.5	23.13
OQU89244	Sorghum	nucleus	19.35	22.97
TraesCS2A01G000100.1	Wheat	nucleus	18.55	22.85
TraesCS5B01G177400.2	Wheat	nucleus	20.16	22.83
TraesCS2B01G020400.3	Wheat	nucleus	19.62	22.74
TraesCS2D01G000600.1	Wheat	cytosol	18.41	22.72
TraesCS2A01G002500.1	Wheat	nucleus	19.76	22.69
TraesCS4D01G183300.1	Wheat	nucleus	3.9	22.66
CDX84180	Canola	cytosol	6.59	22.37
HORVU2Hr1G000390.20	Barley	nucleus	19.62	22.09
Zm00001d034036_P003	Maize	golgi	18.01	22.0
TraesCS5D01G388900.1	Wheat	nucleus	3.76	21.88
Os04t0162100-01	Rice	nucleus	18.01	21.47
CDX76587	Canola	nucleus	12.1	21.28
Zm00001d020036_P002	Maize	nucleus	19.35	21.02
KXG25810	Sorghum	nucleus	15.86	19.47
KRH34601	Soybean	nucleus	19.49	18.49
CDY33160	Canola	nucleus	9.95	16.09
CDY35632	Canola	cytosol	8.74	14.38
CDY42943	Canola	nucleus	8.87	14.19
CDX75032	Canola	mitochondrion, nucleus	6.45	12.57
CDY31712	Canola	nucleus	5.65	12.03
CDX84179	Canola	cytosol	6.59	12.01
CDY00458	Canola	cytosol	4.44	9.59
GSMUA_Achr2P11140_001	Banana	cytosol	0.94	6.31
TraesCSU01G194400.1	Wheat	nucleus	0.94	5.65
TraesCSU01G224600.1	Wheat	nucleus	0.94	5.65

Protein Annotations

EnsemblPlants:CDY38857	EnsemblPlantsGene:GSBRNA2T00066698001	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	PFAM:PF09733
ProteinID:CDY38857	ProteinID:CDY38857.1	SEG:seg	UniParc:UPI0004EDEF35	UniProt:A0A078HLT3	MapMan:12.3.3.1.1.3
MapMan:15.5.15	:	:	:	:	:

Description

BnaA03g13220DBnaA03g13220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLT3]

Coordinates

chrLK032434:+:63317..72551

Molecular Weight (calculated)

83621.2 Da

IEP (calculated)

8.711

GRAVY (calculated)

-0.344

Length

744 amino acids

Sequence
(BLAST)

001: MIDQTHMEYF REHMSDEEKI AAQESLKATY GPPIEFYTFF RRRAIKNPLF LQRSLKYKTE AKRQRSKDAA GVETQELFPL FIMLARLVSS KTTAKSSSAI
101: YKFSRACILT GDDGVSQPQA NFLLPRMDRL ALDAKSGSLV ILFISFAGAQ NSQSGIDSSK IHSGNIGGHC LWSKIPLESL YSSWKEYPNM DLGEKATSVS
201: LVEMQPCFLQ LMSMSEKFVE IQVPSNPLTS SSPQQVQVTI SAQEVGATEN PPYRSSFSFS DFPASSVVLP IHRLRKGQVA FNYSYYNNKL QKTEVTGDFT
301: CPLCKVKCAS FKGLECHIAT HDFFNFEFWV NEKYPAVNVS LNEVTLTETS KCFKKEKKGD PNARLEPYPF SSMKSSRRKQ KTPARNPWPR PIKTDDAADS
401: VKSEKSQIPP GGAESSSQTV PPGMGPADLQ MMNMWNSFMK KHRVITGGCI ACGCEAFSKL HGPFLVRNLD LLCCSRWIDQ MHNEYFCAHM SEEEKIAAEE
501: SFKAYINPTE LYMKLQDRAK KNPLFLQRSL SYKIEAKHQR RIQMTVSLSD TIETQKLFPL YVFLARLVSP EPTAEYSAVY KFSRTCSIPG GVDGKANFLL
601: PEMDRLALKA GSVDLLFISF AGEQNFDSSK IRSGNIGGHC FLSKIPLETL YSSWKKYPNM GLGERATSVS LVEMQPYFLQ LKCIMSEQCV EIQVPRNPLT
701: SSSPQQVQVT ISAQEVGATE NPPYRSSFSF NDFPASSVVL PINR

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.