CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89569
CDY07102
CDY17381
CDY22021
CDY38942

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16845.1	CDX89569	AT2G23380.1	15456723
AT4G16845.1	CDY38942	AT2G23380.1	15456723
AT4G16845.1	CDY07102	AT4G02020.1	15456723
AT4G16845.1	CDY17381	AT4G02020.1	15456723
AT4G16845.1	CDY22021	AT4G02020.1	15456723

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040097.1-P	Field mustard	nucleus	100.0	100.0
CDY35632	Canola	cytosol	86.24	88.72
CDY71414	Canola	nucleus	39.57	45.77
CDX76587	Canola	nucleus	40.43	44.44
CDY43476	Canola	nucleus	14.19	44.3
GSMUA_Achr2P11140_001	Banana	cytosol	9.68	40.54
AT4G16845.1	Thale cress	nucleus	37.85	40.0
TraesCSU01G224600.1	Wheat	nucleus	9.68	36.29
TraesCSU01G194400.1	Wheat	nucleus	9.68	36.29
CDY31712	Canola	nucleus	23.23	30.95
CDX84179	Canola	cytosol	24.95	28.43
CDY33160	Canola	nucleus	27.1	27.39
CDX75032	Canola	mitochondrion, nucleus	22.37	27.23
KRH77315	Soybean	nucleus	24.52	26.64
KRH28171	Soybean	nucleus	24.3	26.59
CDY00458	Canola	cytosol	16.99	22.97
CDX84180	Canola	cytosol	10.32	21.92
KXG37542	Sorghum	nucleus	25.81	19.97
Os09t0306800-01	Rice	cytosol, nucleus	25.81	19.8
HORVU5Hr1G054730.1	Barley	nucleus	26.45	19.31
TraesCS2B01G023900.1	Wheat	cytosol	24.52	19.0
TraesCS5A01G179600.1	Wheat	nucleus	25.81	18.81
TraesCS5D01G184200.2	Wheat	nucleus	25.81	18.81
TraesCS4D01G183300.1	Wheat	nucleus	5.16	18.75
TraesCS5D01G388900.1	Wheat	nucleus	5.16	18.75
HORVU2Hr1G000010.32	Barley	nucleus	24.3	18.65
TraesCS2D01G000600.1	Wheat	cytosol	24.09	18.57
TraesCS2A01G000100.1	Wheat	nucleus	24.09	18.54
CDY16330	Canola	nucleus	25.16	18.51
TraesCS5B01G177400.2	Wheat	nucleus	26.02	18.42
CDX99960	Canola	nucleus	24.95	18.35
CDY00460	Canola	nucleus, plastid	24.95	18.35
CDX91573	Canola	nucleus	24.73	18.25
Zm00001d034036_P003	Maize	golgi	23.87	18.23
OQU89244	Sorghum	nucleus	24.09	17.86
Os04t0162100-01	Rice	nucleus	23.23	17.31
Zm00001d020036_P002	Maize	nucleus	24.3	16.5
KXG25810	Sorghum	nucleus	21.08	16.17
TraesCS2B01G020400.3	Wheat	nucleus	20.86	15.11
HORVU2Hr1G000390.20	Barley	nucleus	21.08	14.83
TraesCS2A01G002500.1	Wheat	nucleus	20.43	14.66
CDY38857	Canola	nucleus	14.19	8.87
TraesCS3B01G073800.1	Wheat	nucleus	4.3	7.81

Protein Annotations

EnsemblPlants:CDY42943	EnsemblPlantsGene:GSBRNA2T00075715001	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF8	PFAM:PF09733
ProteinID:CDY42943	ProteinID:CDY42943.1	SEG:seg	UniParc:UPI0002544325	UniProt:A0A078I1J1	MapMan:12.3.3.1.1.3
MapMan:15.5.15	:	:	:	:	:

Description

BnaA01g18110DBnaA01g18110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1J1]

Coordinates

chrLK032540:-:77793..80728

Molecular Weight (calculated)

53029.3 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.638

Length

465 amino acids

Sequence
(BLAST)

001: MSQEDSQAKS SHDGEKHWMY LKPVRLYDML LCDSPSKQRF LRRNLNYKNQ EKGETRSASA GMVLFNFKDF DNKVQKTQGQ LVSVLPGLQL HLNSFHELLE
101: FEFMTSEENQ TVNVSVRLDA FKTKVIFYKL GNLRKPYNCL KYYSKPFKRT QVGGRNIPKR LNVTILPMDP PFLADDTETG TSLLNNGNPV AMMNVPDIGQ
201: SSGSGARESE GPAAKTRKLS EGTSEARRTS LLQTRQFYHS RTLQPMTLEE VMSDQDSDDE VDDEVADFEY RHMIDDLEDV SPTEKDFMHL WKSFVRYQRV
301: ITDGQVPWAC EAFSKFHKKE FIESKPLHSC WRMFMIKLLE YGLIDAVTIN KCNLIIEDSE DDHSVNTNNN NSVDYGNNSV DYGIDLNRND TMDVDHIGVD
401: LGIGLGRNTA MDVNNNNVDR GIDLNLTMNV NPSNVDRGID LNRNDVMDAD EDVNDSSYLS LSLSL

Best Arabidopsis Sequence Match ( AT4G16845.1 )
(BLAST)

001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK

Arabidopsis Description

VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.