Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G000100.1 | Wheat | nucleus | 98.84 | 98.68 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 91.38 | 91.83 |
| HORVU2Hr1G000010.32 | Barley | nucleus | 91.21 | 90.76 |
| TraesCS5D01G184200.2 | Wheat | nucleus | 78.94 | 74.61 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 73.8 | 73.43 |
| KXG37542 | Sorghum | nucleus | 73.13 | 73.38 |
| VIT_00s1675g00010.t01 | Wine grape | cytosol | 14.93 | 72.58 |
| OQU89244 | Sorghum | nucleus | 71.31 | 68.58 |
| Zm00001d034036_P003 | Maize | golgi | 69.15 | 68.47 |
| Zm00001d020036_P002 | Maize | nucleus | 70.81 | 62.34 |
| TraesCS4D01G183300.1 | Wheat | nucleus | 10.95 | 51.56 |
| VIT_02s0234g00050.t01 | Wine grape | nucleus | 31.51 | 50.4 |
| TraesCS5D01G388900.1 | Wheat | nucleus | 10.45 | 49.22 |
| KRH28171 | Soybean | nucleus | 34.66 | 49.18 |
| GSMUA_Achr4P29640_001 | Banana | nucleus | 53.73 | 48.94 |
| KRH77315 | Soybean | nucleus | 34.49 | 48.6 |
| VIT_16s0013g00860.t01 | Wine grape | nucleus | 53.23 | 48.49 |
| Solyc03g093640.2.1 | Tomato | nucleus | 50.58 | 47.81 |
| CDY43476 | Canola | nucleus | 11.77 | 47.65 |
| CDX91573 | Canola | nucleus | 49.09 | 46.98 |
| AT5G51230.1 | Thale cress | nucleus | 49.09 | 46.91 |
| GSMUA_Achr2P11170_001 | Banana | nucleus | 53.07 | 46.38 |
| CDY16330 | Canola | nucleus | 48.26 | 46.04 |
| Bra022541.1-P | Field mustard | nucleus | 48.26 | 46.04 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 47.76 | 45.57 |
| CDY00460 | Canola | nucleus, plastid | 47.76 | 45.57 |
| CDX99960 | Canola | nucleus | 47.76 | 45.57 |
| KRH33365 | Soybean | nucleus | 45.61 | 45.23 |
| KRG90126 | Soybean | nucleus | 44.94 | 44.57 |
| Bra015201.1-P | Field mustard | cytosol | 23.55 | 41.28 |
| CDY00458 | Canola | cytosol | 23.55 | 41.28 |
| CDY71414 | Canola | nucleus | 25.7 | 38.56 |
| VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 14.76 | 38.36 |
| AT4G16845.1 | Thale cress | nucleus | 26.87 | 36.82 |
| CDX76587 | Canola | nucleus | 25.7 | 36.64 |
| Bra021078.1-P | Field mustard | nucleus | 25.54 | 36.24 |
| CDX84180 | Canola | cytosol | 9.95 | 27.4 |
| Bra005316.1-P | Field mustard | nucleus | 9.95 | 25.32 |
| CDY42943 | Canola | nucleus | 18.57 | 24.09 |
| Bra040097.1-P | Field mustard | nucleus | 18.57 | 24.09 |
| CDY35632 | Canola | cytosol | 17.91 | 23.89 |
| CDY31712 | Canola | nucleus | 12.27 | 21.2 |
| KRH34601 | Soybean | nucleus | 27.36 | 21.05 |
| CDY33160 | Canola | nucleus | 15.92 | 20.87 |
| CDX75032 | Canola | mitochondrion, nucleus | 12.27 | 19.37 |
| Bra005262.1-P | Field mustard | mitochondrion | 12.11 | 19.11 |
| CDY38857 | Canola | nucleus | 22.72 | 18.41 |
| Bra029179.1-P | Field mustard | nucleus | 26.2 | 18.29 |
| CDX84179 | Canola | cytosol | 12.27 | 18.14 |
| AT4G16810.1 | Thale cress | nucleus | 8.29 | 16.67 |
| AT2G35670.1 | Thale cress | nucleus | 16.42 | 13.11 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G000600.1 | EnsemblPlantsGene:TraesCS2D01G000600 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF0 | PFAM:PF09733 |
| SEG:seg | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:278571..286007
Molecular Weight (calculated)
68218.0 Da
IEP (calculated)
6.607
GRAVY (calculated)
-0.393
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRQPSTLEL SPDEQLAAEE TFKLYCKPVE LCNVIQKRAL DNPAFLQRCL HYMIQASRKK RIQLTVSLSR GTNTDHNIFP LYVLLATPTS DSIPLEGHSP
101: IYRFSRACLL TSFTEFASKD HNKATFTIPD VKNIATSRAC NLSIILIRCV SDSEGQVGEN NCSGDHVEAS ALRKLEGKCF WGKIPINLLG SSLENCVTLN
201: LGHTVELAST VTMNPSFLEP KFLEQDSCLT FCSHKVDATG SYQLQVGISV QEAGARDMSE SPYNSYSYSD VPPSSLPHII RLRAGNVIFN FKYYNNTMQK
301: TEVTEDFACA FCLVKCGSYK GLGCHLNSTH DLFHFEFWIS EECQAVNVSL KADAWKMELV GKGVDPRHQT FSYCSRLKMR RRRSLATVEN ISPVHPHIMD
401: SVSPEDAQAG SSKDEFVQRE DDNNSVAPDS AEHDHSLNGS NLTPPTVLEF GKTRKLSAER SDPRNRQLLQ KRQFFHSHRA QPMAVEQVLS DHDSEDEVDD
501: DIADLEDRRM LADFLDVTKD EKLIMHMWNS FIRKQRVLAD GHIPWACEGF SRLHGPQLVQ NPPLLWCWRL VMIKLWNHSL LDARAMNTCN TILEGYQPNN
601: KTF
101: IYRFSRACLL TSFTEFASKD HNKATFTIPD VKNIATSRAC NLSIILIRCV SDSEGQVGEN NCSGDHVEAS ALRKLEGKCF WGKIPINLLG SSLENCVTLN
201: LGHTVELAST VTMNPSFLEP KFLEQDSCLT FCSHKVDATG SYQLQVGISV QEAGARDMSE SPYNSYSYSD VPPSSLPHII RLRAGNVIFN FKYYNNTMQK
301: TEVTEDFACA FCLVKCGSYK GLGCHLNSTH DLFHFEFWIS EECQAVNVSL KADAWKMELV GKGVDPRHQT FSYCSRLKMR RRRSLATVEN ISPVHPHIMD
401: SVSPEDAQAG SSKDEFVQRE DDNNSVAPDS AEHDHSLNGS NLTPPTVLEF GKTRKLSAER SDPRNRQLLQ KRQFFHSHRA QPMAVEQVLS DHDSEDEVDD
501: DIADLEDRRM LADFLDVTKD EKLIMHMWNS FIRKQRVLAD GHIPWACEGF SRLHGPQLVQ NPPLLWCWRL VMIKLWNHSL LDARAMNTCN TILEGYQPNN
601: KTF
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Arabidopsis Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.