Factsheet for HORVU2Hr1G000010.32

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G110110.2
HORVU4Hr1G053740.8
HORVU7Hr1G026840.1
HORVU7Hr1G026910.29
HORVU7Hr1G031800.2
HORVU7Hr1G073410.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	HORVU4Hr1G053740.8	AT1G02580.1	15456723
AT2G35670.1	HORVU4Hr1G053740.8	AT1G02580.1	16924116
AT2G35670.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT2G35670.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT2G35670.1	HORVU7Hr1G026840.1	AT2G23380.1	16924116
AT2G35670.1	HORVU7Hr1G026910.29	AT2G23380.1	16924116
AT2G35670.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723
AT2G35670.1	HORVU4Hr1G053740.8	AT4G02020.1	16924116
AT4G16845.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT4G16845.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT4G16845.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723
AT5G51230.1	HORVU3Hr1G110110.2	AT1G30530.1	23778966
AT5G51230.1	HORVU7Hr1G031800.2	AT1G30530.1	23778966
AT5G51230.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT5G51230.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT5G51230.1	HORVU7Hr1G073410.1	AT3G20740.1	23778966
AT5G51230.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723
AT5G51230.1	HORVU4Hr1G053740.8	AT4G02020.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G000600.1	Wheat	cytosol	90.76	91.21
TraesCS2B01G023900.1	Wheat	cytosol	89.77	90.67
TraesCS2A01G000100.1	Wheat	nucleus	90.26	90.56
HORVU5Hr1G054730.1	Barley	nucleus	78.55	74.73
Os09t0306800-01	Rice	cytosol, nucleus	73.43	73.43
KXG37542	Sorghum	nucleus	72.77	73.38
VIT_00s1675g00010.t01	Wine grape	cytosol	14.69	71.77
OQU89244	Sorghum	nucleus	70.96	68.58
Zm00001d034036_P003	Maize	golgi	68.32	67.98
Zm00001d020036_P002	Maize	nucleus	70.79	62.63
VIT_02s0234g00050.t01	Wine grape	nucleus	31.19	50.13
HORVU2Hr1G000390.20	Barley	nucleus	53.8	49.32
VIT_16s0013g00860.t01	Wine grape	nucleus	52.48	48.04
GSMUA_Achr4P29640_001	Banana	nucleus	52.48	48.04
KRH28171	Soybean	nucleus	33.5	47.76
KRH77315	Soybean	nucleus	33.66	47.66
CDY43476	Canola	nucleus	11.72	47.65
Solyc03g093640.2.1	Tomato	nucleus	48.84	46.4
AT5G51230.1	Thale cress	nucleus	47.85	45.96
CDX91573	Canola	nucleus	47.52	45.71
GSMUA_Achr2P11170_001	Banana	nucleus	51.82	45.51
CDX99960	Canola	nucleus	47.36	45.41
Bra015200.1-P	Field mustard	nucleus, plastid	47.36	45.41
CDY00460	Canola	nucleus, plastid	47.36	45.41
Bra022541.1-P	Field mustard	nucleus	47.19	45.25
CDY16330	Canola	nucleus	47.19	45.25
KRH33365	Soybean	nucleus	45.21	45.07
KRG90126	Soybean	nucleus	44.06	43.91
Bra015201.1-P	Field mustard	cytosol	22.94	40.41
CDY00458	Canola	cytosol	22.94	40.41
CDY71414	Canola	nucleus	25.41	38.31
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	14.36	37.5
AT4G16845.1	Thale cress	nucleus	26.57	36.59
CDX76587	Canola	nucleus	25.41	36.41
Bra021078.1-P	Field mustard	nucleus	25.25	36.0
CDX84180	Canola	cytosol	9.9	27.4
Bra005316.1-P	Field mustard	nucleus	9.9	25.32
CDY42943	Canola	nucleus	18.65	24.3
Bra040097.1-P	Field mustard	nucleus	18.65	24.3
CDY35632	Canola	cytosol	17.99	24.11
CDY33160	Canola	nucleus	16.01	21.09
CDY31712	Canola	nucleus	12.05	20.92
KRH34601	Soybean	nucleus	26.9	20.79
CDX75032	Canola	mitochondrion, nucleus	12.05	19.11
Bra005262.1-P	Field mustard	mitochondrion	12.05	19.11
CDY38857	Canola	nucleus	23.27	18.95
Bra029179.1-P	Field mustard	nucleus	26.57	18.63
CDX84179	Canola	cytosol	12.21	18.14
AT4G16810.1	Thale cress	nucleus	8.09	16.33
AT2G35670.1	Thale cress	nucleus	16.17	12.98

Protein Annotations

EnsemblPlants:HORVU2Hr1G000010.32	EnsemblPlantsGene:HORVU2Hr1G000010	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	PFAM:PF09733
SEG:seg	UniParc:UPI000B46D461	UniProt:A0A287GUP2	MapMan:12.3.3.1.1.3	MapMan:15.5.15	:

Description

No Description!

Coordinates

chrchr2H:+:25486..31921

Molecular Weight (calculated)

68569.6 Da

IEP (calculated)

6.826

GRAVY (calculated)

-0.366

Length

606 amino acids

Sequence
(BLAST)

001: MCRQPSTPDL SPDEQLAAEE TFKLYCKPVE LCNVIQKRAL DNPAFLQRCL HYMIQASRKK RIQLTVSLSR GIECPDQNIF PLYLLLATPT SDNIPLEGHS
101: PIYRFSRACL LTSFSEFAST KATFMIPDVK NIATSRACNL SVILIRCASQ GQAGENNCSG DHVEASALRK LEGKCFWGKI PINLLGSSLE NCVTLNLGHT
201: VELASTVTMS PSFLEPKFLE QDSCLTFCSH KVDATGSYQL QVGISVQEAG ARDMSESPYN SYSYSDVPPS SVSHIIRLRA GNVIFNFKYY NNTMQKTEVT
301: EDFACAFCLV KCGSYKGLGC HLNSTHDLFH FEFWISEECQ AVNVSLKADA WKMELMGKGV DPRHQTFSYC SRLKVRRRRS VATAENISPV HPHIMDSGSP
401: EDTQAGSKDE FVQREDVFQI SIPDNNSVAL DSAEHDHSLN GSNLTPPTVL EFGKTRKLSA ERSDPRNRQL LQKRQFFHSH RAQPIAVEQV FSDHDSEDEV
501: DDDIADFEDR RMLADFLDVT KDEKLIMHMW NSFIRKQRVL ADGHIPWACE GFSRLHGPQL VQNPPLLWCW RFVMIKLWNH NLLDARAMNT CNMILEGYHP
601: HPKKKT

Best Arabidopsis Sequence Match ( AT4G16845.1 )
(BLAST)

001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK

Arabidopsis Description

VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.